DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RSG7 and Rgs3

DIOPT Version :9

Sequence 1:NP_001245722.1 Gene:RSG7 / 32674 FlyBaseID:FBgn0024941 Length:647 Species:Drosophila melanogaster
Sequence 2:XP_017449084.1 Gene:Rgs3 / 54293 RGDID:3566 Length:1144 Species:Rattus norvegicus


Alignment Length:661 Identity:144/661 - (21%)
Similarity:227/661 - (34%) Gaps:249/661 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 GGAAPGTATPSPT---------PLANGSNNGTGSSVSPAATGTGAVATAASAPAAAGTTSA--SP 108
            |...|.:..|||:         |....|.:|..::..|.:..:..:||..:.|.:..|:::  ||
  Rat   650 GQELPPSKDPSPSQELPAGQDLPPRKESFSGQEAAPGPESPSSEDIATCQNPPQSPETSTSKDSP 714

  Fly   109 P--ASNPTT------------ASTSTASVVGAKTAAATTTSSSSATSSSTAAAGSKQSGSSGGLL 159
            |  .|:|||            .|||...::..:..|...:|:|...     ...|::|..|.|.|
  Rat   715 PGQGSSPTTEVPSCQGLPAGQESTSQDPLLSQEPPAIPESSASDQN-----VLPSQESPPSQGSL 774

  Fly   160 TVSGNHHHHHHAHPQQSAAGQSAAQPPQPPTATALAVPSAS---------------------HHQ 203
            :              :.|..:....|.:.|.||| ..||||                     |..
  Rat   775 S--------------EKALAEQTISPGELPAATA-GEPSASRPNFVIPEVRLDSAYSQQDGAHGG 824

  Fly   204 RGGKNEDAP------------------------NILVYKKMEAIIEKMQAESTGVAVRTVKAFMS 244
            ..|::|||.                        |   ..|..::||..|....|:::|...:...
  Rat   825 SSGEDEDAEEGEEGEEGEEDEEDDTSDDNYGDRN---EAKRSSLIETGQGAEGGLSLRVQNSLRR 886

  Fly   245 KVPSVFTGADLVAWILKNFDVEDVTEALHFAHLLSSHGYIFPIDDHALTVKNDGTFYRFQTPYFW 309
            :..|                        ..:.|..:.|..|..|                     
  Rat   887 RTHS------------------------EGSLLQEARGPCFASD--------------------- 906

  Fly   310 PSNCWEPENTDYAVYLCKRTMQNKTRLELADYEAENLAKLQKMFSRKWEFIFMQAESQSKVAKKR 374
                                    |.|..:|.|...                             
  Rat   907 ------------------------TTLHCSDGEGTT----------------------------- 918

  Fly   375 DKLERKVLDSQERAFWDVHRPMPGCVNTTEIDIKKAYRRGGSSHG-----TG---SAGASLAKNP 431
                         :.|.:  |.|..:.      |:..|.|||.|.     ||   .:|..||.: 
  Rat   919 -------------STWAI--PSPRTLK------KELGRNGGSMHHLSLFFTGHRKMSGTDLADD- 961

  Fly   432 VEQLTRIIALRKQKLERRTIKVSKAAEALVAYYDQYNEFDYFITSPELPNPWQTDSTEMWDTEKN 496
                  :.|.||    |::..::|..:..:|.:.:.||      ||......:.|.     |.|:
  Rat   962 ------VEASRK----RKSKNIAKDMKNKLAIFRRRNE------SPGAQPAGKADK-----TTKS 1005

  Fly   497 SKEVPVRRVKRWAFSLRELLNDAIGREQFTKFLEKEYSGENLKFWESVQEMKAL-PQSEIKEAIQ 560
            .|......:| |:.||.:||....|.|.|..||..|:|.|||:||.:.::.|.: .||::....:
  Rat  1006 FKPTSEEALK-WSESLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAK 1069

  Fly   561 KIWQEFLAPEAPCPVNVDSKSVELAREAVNSPSGPNRWCFDVAASHVYHLMKSDSYSRYLRSDMY 625
            ||:.||:|.:|...||:||.:.|..:|.:.|.:   |.|||:|...::.||:.|||.|:||||:|
  Rat  1070 KIFAEFIAIQACKEVNLDSYTREHTKENLQSIT---RGCFDLAQKRIFGLMEKDSYPRFLRSDLY 1131

  Fly   626 KDYLNCSRKKI 636
            .|.:|  :||:
  Rat  1132 LDLIN--QKKM 1140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RSG7NP_001245722.1 DEP_RGS7-like 222..309 CDD:239897 10/86 (12%)
GGL 432..493 CDD:128520 11/60 (18%)
RGS_R7-like 504..627 CDD:188660 50/123 (41%)
Rgs3XP_017449084.1 C2_RGS-like 35..154 CDD:176067
PDZ_signaling 195..268 CDD:238492
PHA03307 578..>802 CDD:223039 41/171 (24%)
RGS_RGS3 1020..1133 CDD:188668 47/115 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3589
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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