DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RSG7 and rgs12b

DIOPT Version :9

Sequence 1:NP_001245722.1 Gene:RSG7 / 32674 FlyBaseID:FBgn0024941 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_999889.1 Gene:rgs12b / 378970 ZFINID:ZDB-GENE-031006-13 Length:1540 Species:Danio rerio


Alignment Length:583 Identity:123/583 - (21%)
Similarity:219/583 - (37%) Gaps:156/583 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 PPASNPTTASTST------ASVVGAKTAA-----ATTTSSSSATSSSTAAAGS---KQSGSSGGL 158
            ||.|.|.....|.      .|:.|.:..|     .....::|.:|:|.:..|:   ::..:...|
Zfish   389 PPTSQPLLQFVSVLYRDMGESIEGMRARAFLDGDLDAQQNNSTSSNSDSGIGNFLPEEKNNRVLL 453

  Fly   159 LTVSGNHHHHHHAHPQQSAAG---QSA--AQPPQPPTATALAVPSASHHQRGGKNE---DAPNIL 215
            :.:..|...|....|.::..|   |.|  ..||.||       |....|:.|.::|   |.|   
Zfish   454 VDLGANPSRHVPTGPWENPMGSFCQGAIGGLPPPPP-------PPPISHRNGFRHEQFVDHP--- 508

  Fly   216 VYKKMEAIIEKMQAESTGVAVRTVKAFMSKVPSVFTGADLVAWILKNFDVEDVTEALHFAHLLSS 280
                      :....|.|            .|.:.:|..|.:  ....||..:....|:    |:
Zfish   509 ----------QPHPHSHG------------DPPLLSGRHLNS--SSRLDVSGLPSRSHY----SA 545

  Fly   281 HG---------YIFPIDDHALTVKNDGTFYRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNKTRL 336
            ||         ...|:  |.|.....| ....|..|...::.|...|       |.......:::
Zfish   546 HGKKAAGASGQRWLPV--HVLRDWRQG-HSSDQESYAESTDGWSSAN-------CSTLPPPMSKI 600

  Fly   337 ELADYEA--ENLAKLQKMFSRKWEF---IFMQAESQSKVAKKRDKLERKVLDSQERA--FWDVHR 394
            ....|.|  |..::..::.::|.|:   :|  .|...:...::....|:..||:::.  |..:..
Zfish   601 PADRYRAAGEIASQPHRLHAQKDEWAKKLF--GEKNLREHSQQSNNVRRAKDSEKKGGRFKGITM 663

  Fly   395 PMPGCVNTTEIDIKKAYRRGGSSHGTGSAGASLAKNPVEQLTRIIALRKQKLERRTIKVSKAAEA 459
            ..|                 ..|.|..|.|.|               ::..:.|....:..||.:
Zfish   664 GFP-----------------QRSSGRRSFGRS---------------KRLSMARSLDDLESAAVS 696

  Fly   460 LVAYYDQYNEFDYFITSPELPNPWQTDSTEMWDTEKNSKEVP---------VRRVKRWAFSLREL 515
                       |..:.|.:|......:|.      .::..:|         .|||..||.....|
Zfish   697 -----------DGELNSVDLKGCGSDNSL------NSNASLPSVQCHRRHTERRVASWAVCFERL 744

  Fly   516 LNDAIGREQFTKFLEKEYSGENLKFWESVQEMKALPQSEIKEAIQK---IWQEFLAPEAPCPVNV 577
            |.|.:|...|::||:||:|.||:.||::.:....:|:::.|:..|:   |:..||:.:|..|||:
Zfish   745 LQDPVGVRYFSEFLKKEFSEENILFWQACEYFSHVPETDKKQLSQRAREIYNSFLSSKATTPVNI 809

  Fly   578 DSKSVELAREAVNSPSGPNRWCFDVAASHVYHLMKSDSYSRYLRSDMYKDYLNCSRKKIKSIP 640
            ||:: :||.:.:|:|. |:  .|......:::|||.|||:|:|:|.:|::   |...:::..|
Zfish   810 DSQA-QLADDILNAPR-PD--MFKEQQLQIFNLMKFDSYTRFLKSYLYQE---CMLAEVEGRP 865

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RSG7NP_001245722.1 DEP_RGS7-like 222..309 CDD:239897 17/95 (18%)
GGL 432..493 CDD:128520 7/60 (12%)
RGS_R7-like 504..627 CDD:188660 46/125 (37%)
rgs12bNP_999889.1 PDZ_signaling 20..96 CDD:238492
PTB_RGS12 239..372 CDD:269984
RGS_RGS12 741..855 CDD:188696 42/117 (36%)
RGS12_us1 861..954 CDD:293219 1/5 (20%)
RGS12_RBD 993..1065 CDD:176412
UBQ 1065..1132 CDD:294102
RGS12_us2 1141..>1180 CDD:293217
GoLoco 1195..1216 CDD:280368
RGS12_usC <1307..1367 CDD:293218
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3589
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.