DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RSG7 and rgs-4

DIOPT Version :9

Sequence 1:NP_001245722.1 Gene:RSG7 / 32674 FlyBaseID:FBgn0024941 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_001364555.1 Gene:rgs-4 / 189666 WormBaseID:WBGene00004347 Length:308 Species:Caenorhabditis elegans


Alignment Length:372 Identity:88/372 - (23%)
Similarity:141/372 - (37%) Gaps:135/372 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   315 EPENTDYAVYLCKRTMQNK---------TRLELADYEA------------ENLAKL--------- 349
            |..|...::..||.....|         |..::||.:.            ||:|..         
 Worm     9 EEMNKKISISECKNPPSKKNSTSSGGVLTYSKVADLQGDETPPRKKSSLKENIAAAFRSPVFLIR 73

  Fly   350 QKMFSRKWEFIFMQAESQSKVAK----KRDKLERKVLDSQERAFWDVHRPMPGCVNTTEIDIKKA 410
            ::....:||    |...:.|:::    .||: :||...|:||.                      
 Worm    74 REATKARWE----QVRERLKLSRVKISMRDR-KRKASKSRERR---------------------- 111

  Fly   411 YRRG--GSSHGTGSAGASLAKNPVEQLTRIIALRKQKLERRTIKVSKAAEALVAYYDQYNEFDYF 473
             ||.  ..|:|.||...:.|.|                 ...|..::..                
 Worm   112 -RRSNENQSNGNGSTPPTSANN-----------------MNMISPNQVP---------------- 142

  Fly   474 ITSPEL-PNPWQTDSTEMWDTEKNSKEVPVRRVKRWAFSLRELLNDAIGREQFTKFLEKEYSGEN 537
             .||.| ||.||                         |:...::.|..||.||||||:.|||.||
 Worm   143 -PSPRLSPNEWQ-------------------------FAFDHVIYDVDGRAQFTKFLQSEYSEEN 181

  Fly   538 LKFWESVQEMKALPQSE----IKEAIQKIWQEFLAPEAPCPVNV--DSKSVELAREAVNSPSGPN 596
            :.||.:|:|:||:..||    .:..:|:::..|:|.|:|..:|:  |:::..:|......||...
 Worm   182 ILFWWAVEELKAVGVSEGRTKFESTVQEMYDTFIAAESPLAINIDHDTRTDIIALVEGKEPSTFP 246

  Fly   597 RWCFDVAASHVYHLMKSDSYSRYLRSDMYKDYLNCSRKKIKSIPNLF 643
            ...::.|.:|||.||:.|.:||::.::.|||.    .||: |:|..|
 Worm   247 ENIYERAQAHVYRLMEKDCFSRFVHTNAYKDV----AKKL-SLPQTF 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RSG7NP_001245722.1 DEP_RGS7-like 222..309 CDD:239897
GGL 432..493 CDD:128520 8/61 (13%)
RGS_R7-like 504..627 CDD:188660 43/128 (34%)
rgs-4NP_001364555.1 RGS 156..277 CDD:214613 42/120 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.