DRSC/TRiP Functional Genomics Resources

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Protein Alignment ppk28 and mec-4

DIOPT Version :9

Sequence 1:NP_573169.2 Gene:ppk28 / 32671 FlyBaseID:FBgn0030795 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_510712.2 Gene:mec-4 / 181728 WormBaseID:WBGene00003168 Length:768 Species:Caenorhabditis elegans


Alignment Length:753 Identity:143/753 - (18%)
Similarity:229/753 - (30%) Gaps:282/753 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 GSSGCKKDSESDDDENTICSRAAIK-----RSVVYYLK----NSTLHGLKYIAEESITIPERIFF 68
            |...|...:||:.....|......|     :.:.::.|    .::.||:..|. |:..:..|..:
 Worm    48 GYGECFNSTESEVQCELITGEFDPKLLPYDKRLAWHFKEFCYKTSAHGIPMIG-EAPNVYYRAVW 111

  Fly    69 GLAFVLVVILSVFFISNVYVKWSASPIIISTSAKQKLTSNMPFPAITICNLN---QALLSKVDRI 130
            .:.|:..:|:......:|..|::.:..|:....|   ....||||||:||||   .:|.:.||.:
 Worm   112 VVLFLGCMIMLYLNAQSVLDKYNRNEKIVDIQLK---FDTAPFPAITLCNLNPYKASLATSVDLV 173

  Fly   131 GRTSTNFSLLMG-------------------------------------------------LCDQ 146
            .||.:.|...||                                                 ||..
 Worm   174 KRTLSAFDGAMGKAGGNKDHEEEREVVTEPPTTPAPTTKPARRRGKRDLSGAFFEPGFARCLCGS 238

  Fly   147 GG----------------DTTISYIGTWKYFKAILVDVAQPCEKMLLY----------------- 178
            .|                :||     |.|.|.  :.|..:..:.|..|                 
 Worm   239 QGSSEQEDKDEEKEEELLETT-----TKKVFN--INDADEEWDGMEEYDNEHYENYDVEATTGMN 296

  Fly   179 -----------------------CSFGSREEDC-------SWLFT--------SILTDDG----- 200
                                   |:|.....|.       :|..|        :..|.|.     
 Worm   297 MMEECQSERTKFDEPTGFDDRCICAFDRSTHDAWPCFLNGTWETTECDTCNEHAFCTKDNKTAKG 361

  Fly   201 -----------LCCNFNALHPSYLIRNY---------------------SDDVRLET-AHPN--- 229
                       .|..:|...|...|..|                     :|:|.:.| |..|   
 Worm   362 HRSPCICAPSRFCVAYNGKTPPIEIWTYLQGGTPTEDPNFLEAMGFQGMTDEVAIVTKAKENIMF 426

  Fly   230 ---------------TRYELIDWTPEKGYARNLP---------------EFYFPRTSGGTGIRMG 264
                           |:.||:......|.|.::.               .|...||...|.||.|
 Worm   427 AMATLSMQDRERLSTTKRELVHKCSFNGKACDIEADFLTHIDPAFGSCFTFNHNRTVNLTSIRAG 491

  Fly   265 ------LTVVLNASIAEYYCTKSMSVGFKVLVHNPAELPKVSNYGFVVTAG----------REAR 313
                  :.|.:|||   .|...:.:.|.::.:|:..:.|....:|:....|          :.:|
 Worm   492 PMYGLRMLVYVNAS---DYMPTTEATGVRLTIHDKEDFPFPDTFGYSAPTGYVSSFGLRLRKMSR 553

  Fly   314 IPIEPVYEDALPTIRSIKKSVRRCLFSDENDLAYYR-TYSRKNCELECEAKLLLRECSC--VLYY 375
            :|..  |.|.:|..::             :|..|.. .||.:.|...|..:|:|:||.|  ..:.
 Worm   554 LPAP--YGDCVPDGKT-------------SDYIYSNYEYSVEGCYRSCFQQLVLKECRCGDPRFP 603

  Fly   376 LPR-------IDPLARVCGPNDNQCTDRVQTEIESSLTNLSCENCWPGCFELTYRATLSTASIVS 433
            :|.       .||:||       :|.|....::.....:..| .|...|.:..|..|.|.|...|
 Worm   604 VPENARHCDAADPIAR-------KCLDARMNDLGGLHGSFRC-RCQQPCRQSIYSVTYSPAKWPS 660

  Fly   434 -DPRFQAG-------ENLPEYIFHGPYSNASEISILHFYYMTNIFRSTTKSEMFGFTEFLSNTGG 490
             ..:.|.|       |....|     ..|.:.:.:  ||...| |...|:||.:||...|::.||
 Worm   661 LSLQIQLGSCNGTAVECNKHY-----KENGAMVEV--FYEQLN-FEMLTESEAYGFVNLLADFGG 717

  Fly   491 LLGLFMGFSIFSVIEIFFYITVRPYCASRTLRQRHKRR 528
            .|||:.|.|..:..|..|......|.::......:|::
 Worm   718 QLGLWCGISFLTCCEFVFLFLETAYMSAEHNYSLYKKK 755

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ppk28NP_573169.2 ASC 43..509 CDD:279230 134/697 (19%)
mec-4NP_510712.2 deg-1 86..736 CDD:273309 133/694 (19%)
ASC 87..>172 CDD:279230 23/88 (26%)
ASC <428..739 CDD:295594 77/344 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160162325
Domainoid 1 1.000 106 1.000 Domainoid score I4100
eggNOG 1 0.900 - - E1_KOG4294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100105
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X60
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.650

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