DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4789 and Rabl3

DIOPT Version :9

Sequence 1:NP_573166.1 Gene:CG4789 / 32668 FlyBaseID:FBgn0030792 Length:274 Species:Drosophila melanogaster
Sequence 2:NP_001101789.1 Gene:Rabl3 / 360720 RGDID:1306436 Length:236 Species:Rattus norvegicus


Alignment Length:265 Identity:115/265 - (43%)
Similarity:163/265 - (61%) Gaps:40/265 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAMNNRVRIVVVGDSGVGKTSLTHLITHNEALIRPGWTVGCNIQVKMHPFREGTARECPYFVELF 65
            ||..:||:::|:|||||||:||.||:.||:.|..|.|||||::.:::|.::|||..|..|::||:
  Rat     1 MASLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRVHDYKEGTPEEKTYYIELW 65

  Fly    66 DVGGSLNH----KNTRSVFYAGIDGIILVHDLTNAKSQRQLIDWLYEIVNKEGKDTNKSNGASMP 126
            |||||:..    |:||:|||..::||||||||||.||.:.|..|..|::|::          ::|
  Rat    66 DVGGSVGSASSVKSTRAVFYNSVNGIILVHDLTNKKSSQNLYRWSLEVLNRD----------AVP 120

  Fly   127 PSPPSPLSSFSTDNLGTDGHILFDMEEFLGATQTPILVMGTKLDLLDE-KRHPKMGVKKPGGIAD 190
                       |..|.|:|.  :|.|:| ...|.|:||:|||||.:.| |||..:  .:...:|:
  Rat   121 -----------TGVLVTNGD--YDREQF-ADNQIPLLVIGTKLDQIHETKRHEVL--IRTAFLAE 169

  Fly   191 KCGAEEIWLNCRNSRSLAAGTTDAVKLSRFFDRVIENRKALRAALAFGVSSSNAVSP-PDRRRFG 254
            ...||||.|:|.|.||.|||:::|||||||||:|||.|...|        ..|.:.. .||:|||
  Rat   170 DFNAEEINLDCTNPRSSAAGSSNAVKLSRFFDKVIEKRYLFR--------EGNQIPGFSDRKRFG 226

  Fly   255 PTSAK 259
            ..:.|
  Rat   227 GGTLK 231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4789NP_573166.1 P-loop_NTPase 7..228 CDD:304359 103/225 (46%)
Rabl3NP_001101789.1 RabL3 7..210 CDD:206689 104/228 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 129 1.000 Domainoid score I5169
eggNOG 1 0.900 - - E1_2CN0E
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H12171
Inparanoid 1 1.050 190 1.000 Inparanoid score I3795
OMA 1 1.010 - - QHG49110
OrthoDB 1 1.010 - - D1269342at2759
OrthoFinder 1 1.000 - - FOG0005865
OrthoInspector 1 1.000 - - oto95547
orthoMCL 1 0.900 - - OOG6_105341
Panther 1 1.100 - - LDO PTHR24073
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4259
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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