DRSC/TRiP Functional Genomics Resources

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Protein Alignment if and itga1

DIOPT Version :9

Sequence 1:NP_001162777.1 Gene:if / 32661 FlyBaseID:FBgn0001250 Length:1396 Species:Drosophila melanogaster
Sequence 2:XP_021334930.1 Gene:itga1 / 570868 ZFINID:ZDB-GENE-091118-115 Length:1183 Species:Danio rerio


Alignment Length:903 Identity:222/903 - (24%)
Similarity:356/903 - (39%) Gaps:215/903 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 DTSRYQQGVTEAG---GVFKCSL-------ND--------DDCK---------LVPFDSKGNNRN 117
            ||:|.:....|.|   ||.|..:       :|        |.|:         .|..|....|::
Zfish   249 DTARKEAFTVERGARPGVKKVMVIVTDGESHDHHNLKSVIDQCQEDGIERFAVAVLGDYNRQNKS 313

  Fly   118 VD--KEVVDRKSYQWLGATVATGRDSDLVVACAPRYVFHTMTP---SRAFRIDPVGTCFTSHNFE 177
            :|  |:.::...|      :|:...||.....:......|:..   |:.|.::......|| :||
Zfish   314 IDEIKKFIEEIEY------IASETKSDHFFNVSDERALVTIVDTLGSKIFALEATSGKHTS-SFE 371

  Fly   178 EFYEVSPCRTNNWGYHRQGSCQAGFSAAINGNGSRLFIGAPGSWYWQ-------GQTYSIPPDAK 235
              .|:|               ||||||..:..|  :.:||.|::.|.       |..:.:|  .|
Zfish   372 --MEMS---------------QAGFSAHTSKAG--VMLGAVGAFDWNGTVVMQAGNEFVVP--KK 415

  Fly   236 FPFKPPLYQPFGTGGMASSHDVTRPENQVFSTSESASVNDDSYLGYSMVTGDFDGDRSEDVAI-- 298
            ..|..|..|.:  .|||                        .|:||     |.....:.:..:  
Zfish   416 NTFHNPSVQRY--EGMA------------------------GYVGY-----DVQSAYTPNGVLYI 449

  Fly   299 -GMPRGGNLVGRIVVNRW---NMANIFNITGRQIGEYFGYSLATSDVDGDGLDD-LLIGAPMYTD 358
             |.|| .|..||:.|.|:   |:..:..:.|.|||.|||..|.|.|:|||...| ||:.|||:..
Zfish   450 TGAPR-FNHSGRVTVYRFDGENVTIVQTLKGEQIGSYFGSVLQTHDIDGDNYTDILLVAAPMFMG 513

  Fly   359 PDNVEGKYDVGRVYI--LLQGGPTEEKRWTTEHIRD---GYHSK-------------GRFGLALT 405
            |:..|    .|:||:  |.:.|..|.: .|.:.:..   ..||.             .|||.|:.
Zfish   514 PERDE----QGQVYVYKLNESGLFEHE-MTLKPVNQTCCSGHSHNNCKIVSKNEPCGARFGTAIA 573

  Fly   406 TLGDVNGDGYGDFAVGAPYDGPEGRGVVYIFHGSPMGPLAKPSQIIKSEQLVEGAPYPRTFGFAL 470
            .:.|:|.|.:.|..:|:|.:. :.||.|||:|||......|..|.|.:....|...:   ||.::
Zfish   574 AVPDLNLDKFSDIVIGSPLEN-DHRGAVYIYHGSQKSIKEKYVQRIAAGGDGESMKF---FGQSI 634

  Fly   471 SGGLDMDGNTYPDLAVGAYSSDQVFIFKSRPVAAVNAETSFASNSKLISLDDRSCQLVRDH-KKV 534
            .|.:|::.:...|:.:|....  ..::.||.||.:.||.:|  :...|:| ..:||:   | |..
Zfish   635 HGIMDLNDDGIIDVTIGGIGG--AALYWSRDVAELLAEMTF--DPIKINL-QHTCQV---HGKTT 691

  Fly   535 PCMLLTTCWSYTGRYLPEQLDFDV---SWLLDAKKLLNPRMFFLRDEGKNIRNQTIRLNYGQKYC 596
            .|:....|:.|..:.:.|.....|   |..||:.:.:....|...::.:..:|::||    .|:|
Zfish   692 VCVKTRVCFKYRIKSVKEMNTGTVIRYSLTLDSLRAVARGRFNETEDRRLQKNESIR----NKFC 752

  Fly   597 LNETVYLLDKVQDKLTPLEVEARYNLRSSRPLDPMVRHRRSILEPVID------QNREIVLRDAI 655
            ...|.|..||: |...|:.|...:.|.....            .||:|      .|:.|.|.|  
Zfish   753 REHTFYTSDKL-DFRDPIMVTLEFGLADEDK------------GPVLDGELPTSLNKTIALVD-- 802

  Fly   656 NIQKNCGPDNICEPDLKLKVS-TVDKYLFGS-PEPLVIEVFISNTNEDAFEAAFYMVTPPDLQFR 718
                 ||.:..|..:|.|:.| .:...|..| .|...:.:.|.||.::|:.....:....::.:.
Zfish   803 -----CGSNEKCVANLHLQASANISSLLIKSNQEKFYVNIDIKNTGDNAYNTKVTLSHTENINYV 862

  Fly   719 KLQQLGEKKDTPITCSPPTPENNHT-LKCDIGNP-LESGKIAHFKISLVPEEKYGSSSSYDFYWE 781
            |:    |.||.  .|     |.||| :.|.:|.| |::.....|||...|..   |....|....
Zfish   863 KV----EPKDK--DC-----ETNHTRIVCAVGYPFLKTKDRETFKIQFEPNP---SLIRKDIVIN 913

  Fly   782 ANSTNLEKPGSEYDNKIR---QSVGIWVDTDLDIKGTSLPDYQLYKADDY---KELE------NA 834
            ..:|.   ...:.|:.::   :::.|.|..:..::.|:    ..|..:|:   ||.|      |.
Zfish   914 VTATT---DSEQSDSALKRNFETIIIPVRHEASMRFTA----NKYMKEDHIILKEKETIPSVFNH 971

  Fly   835 TKEDDIGPQVVHIYEIRNNRPSIIEEAEVFIHLPYETIVGDPLMYLLNQPETGGKIQC 892
            |..  ||.:|...|.|..:........::.|..||:|...:.|:||.:...|.| |:|
Zfish   972 TSV--IGDEVKISYTIEKDPDMPSPPVKLTIMFPYQTSAKNFLLYLTDLSYTAG-IRC 1026

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ifNP_001162777.1 Int_alpha 46..110 CDD:214549 12/56 (21%)
Int_alpha 275..>316 CDD:214549 12/46 (26%)
Int_alpha 398..451 CDD:214549 20/52 (38%)
Int_alpha 466..>497 CDD:214549 6/30 (20%)
Integrin_alpha2 499..893 CDD:285619 102/420 (24%)
DUF2756 <1120..1178 CDD:298627
itga1XP_021334930.1 vWFA 167..348 CDD:320736 20/104 (19%)
Int_alpha 482..532 CDD:214549 23/53 (43%)
Int_alpha 565..618 CDD:214549 20/53 (38%)
Integrin_alpha2 661..1070 CDD:312071 102/420 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574977
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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