DRSC/TRiP Functional Genomics Resources

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Protein Alignment if and itga6b

DIOPT Version :9

Sequence 1:NP_001162777.1 Gene:if / 32661 FlyBaseID:FBgn0001250 Length:1396 Species:Drosophila melanogaster
Sequence 2:NP_001013466.1 Gene:itga6b / 541320 ZFINID:ZDB-GENE-050320-5 Length:1085 Species:Danio rerio


Alignment Length:1454 Identity:339/1454 - (23%)
Similarity:530/1454 - (36%) Gaps:506/1454 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LHCPITSLI-LLLIAMSAHGYNIDLPSYVRFRQSSNSMFGFSIAMHKGRSGFYGNQNNVSLIVGA 76
            |..|:.||: |.||:    .:|:|..:.:|....:||:||||:|||:.    ....:...|:||:
Zfish     7 LTVPLLSLLGLTLIS----AFNLDTVNVIRKTGDANSLFGFSMAMHRQ----LRPADKRMLLVGS 63

  Fly    77 PKFDTSRYQQG-VTEAGGVFKCSLN--DDDCKLVPFDSKGNNRNVDKEVVDRKSYQWLGATVATG 138
            ||......|:. :|  ||::.|.:|  ...|:.|.||::.|.:..:||      .||:|.||.:.
Zfish    64 PKAKALPNQRSKIT--GGLYNCDINIPGQSCQRVMFDNEENLQTENKE------NQWMGVTVQSQ 120

  Fly   139 RDSDLVVACAPRYVFHTMTPSRAFRIDPVGTCFTSHNFEEFYEVSP--------CRTNNWGYHRQ 195
            .....::.||.||.......|.....|..|.|:.........|:|.        |...|.|:.|.
Zfish   121 GPGGKILVCAHRYQRRLFVGSVQELRDLTGRCYVLSEDVTINEISDEDGGDWMFCNGRNRGHERF 185

  Fly   196 GSCQAGFSAAINGNGSRLFIGAPGSWYWQG------QTYSIPPDAKFPFKPPLYQ--PFGTGGMA 252
            ||||.|.||....:...|..||||::.|:|      :..|:       |...::.  |:..|   
Zfish   186 GSCQQGMSATFTKDYHYLVFGAPGAYNWKGIVRLEQKNTSL-------FDKDIFDDGPYEVG--- 240

  Fly   253 SSHDVTRPENQVFSTSESASVNDDSYLGYSMVTGDFDGDRSE-DVAIGMPRGGNLVGRIVVNRWN 316
                   .||::  .:|...|..:||||:|:.:|.....|.: .:..|.|| .|..|.:|:.:.:
Zfish   241 -------DENRL--DAELVPVPANSYLGFSLDSGKMLTKRGQLTIVAGAPR-ANHSGAVVLLKKD 295

  Fly   317 MANI------FNITGRQIGEYFGYSLATSDVDGDGLDDLLIGAPMYTDPDNVEGKYDVGRVYILL 375
            .|..      :.:.|..:...|||.||..|::|||..|:::|||.|...|...|    |.:|:.|
Zfish   296 EAKSSLLTAEYTLEGSGLASSFGYDLAVLDINGDGWQDIVVGAPQYFIKDGDIG----GAIYVYL 356

  Fly   376 QGGPTEEKRW---TTEHIRDGYHSKGRFGLALTTLGDVNGDGYGDFAVGAPYDGPEGRGVVYIFH 437
                .||..|   |.:.| || .:...||||:..:||||.|||.|.||.||||. .|.|.|.|||
Zfish   357 ----NEEGAWDKITPKRI-DG-PAYSMFGLAVENMGDVNLDGYQDVAVSAPYDS-NGAGNVIIFH 414

  Fly   438 GSPMGPLAKPSQIIKSEQLVEGAPY-PRTFGFALSGGLDMDGNTYPDLAVGAYSSDQVFIFKSRP 501
            |||.|        :|..|::.|..: .:.||::|:|.:|:|.|.|||||:|:. ||.||:::||.
Zfish   415 GSPQG--------LKKSQVLGGKDHNVKLFGYSLAGNMDLDRNNYPDLAIGSL-SDSVFVYRSRS 470

  Fly   502 VAAVNAETSFASNSKLISLDDRSCQLVRDHKKVPCMLLTTCWSYTGR---YLPE-QLDFDVSWLL 562
            |  :|.|.:..:..|.:.|..::|    ::....|:.:..|:.::.:   |.|. ::.:.:....
Zfish   471 V--INIEKTVTTTPKELDLTKKNC----NNGNNICLDVKACFKFSVKPKTYNPTLKVAYTIRVES 529

  Fly   563 DAKKLLNPRMFFLRDEGKNIRNQT--IRL-NYGQKYCLNETVYLLDKVQDKLTPLEVEARYNLRS 624
            :.|||..|..........|....|  :.| ..|.:.|:...:.|.:.::|||..:.:|....:  
Zfish   530 ERKKLNLPSRVIFNPRSNNDYESTGIVELKGQGTESCIYRNLMLQETLKDKLRGIPIEVSVEI-- 592

  Fly   625 SRPLDPMVRHRRSI----LEPVIDQNREIVLRDAIN-IQKNCGPDNICEPDLKLKVSTVDKYLFG 684
               |:...|.||..    |.|::|.|:|......:. |::.||.|::|:.||:|      :|.|.
Zfish   593 ---LNQNKRRRRQAALPNLLPILDSNQEATTVAMVQFIKEGCGADHLCQSDLQL------QYKFH 648

  Fly   685 SPEP------------------------LVIEVFISNTNEDAFEAAFYMVTPPDLQFRKLQ-QLG 724
            :.||                        :.:|:...|..|||:|.......|..|.:..:: |.|
Zfish   649 TREPNKDNFFPFDEEKGVPILSLSDQKEIALEIKAVNLGEDAYETQLTASFPKSLSYSAVRTQSG 713

  Fly   725 EKKDTPITCSPPTPENNHTLKCDIGNPLESGKIAHFKISLVPEEKYGSSSSYDFYWEANSTNLEK 789
            :|:   |:|.  ..:|.....||:|||.:......|.|.|                   ||.   
Zfish   714 DKQ---ISCL--VNQNGSQADCDLGNPFKKDAQTTFYIIL-------------------STG--- 751

  Fly   790 PGSEYDNKIRQSVGIWVDT-----DLDIKGTSLPDYQLYKADDYKELENATKEDDIGPQVVHIYE 849
                         ||.:||     ||.:|.||          :.|:|: |.|.            
Zfish   752 -------------GISLDTTEIEIDLKLKTTS----------EQKQLQ-AVKA------------ 780

  Fly   850 IRNNRPSIIEEAEVFIHLPYETIVGDPLMYLLNQPETGGKIQCDDVAFNEYNLLLDEKLVKKSYL 914
                                :.||               |||          |||....|.|   
Zfish   781 --------------------KAIV---------------KIQ----------LLLSLSGVAK--- 797

  Fly   915 QAQGAIWNSAQVSGQSSSSSSSGGASVHIEKARGEGFVRGVLVSNSTDAGDKLSPKQVEQR--RQ 977
              ...::.:.:|.|:|:...                            |||..||...|.|  ..
Zfish   798 --PSQVFFTGEVKGESAMKV----------------------------AGDVGSPIDYEFRVTNL 832

  Fly   978 EDTLEALGDASFVHRDRASQAVQEPQVNQTSFTTYSTSSSSSGSGAPSAQLRGHSTQGHIQMAGP 1042
            :..|::.|        |||..:|.|:                           |::||       
Zfish   833 DKPLKSFG--------RASMIIQWPK---------------------------HNSQG------- 855

  Fly  1043 VQHTSSSSSSNYRSWPAQQQQQHQQLLLAGSGGSGLGSPVTFNDKSQFGGRNNNFHTGTLDLGTL 1107
                         .|         .|.|.....:||.|                       |...
Zfish   856 -------------KW---------LLYLMKMTSTGLDS-----------------------LSCT 875

  Fly  1108 NRGNVDNELYRSQGQYQNPSQSLGQSQGQFQANANQGHYQGQNQAQFQARNPGFQGQTSYQGQTQ 1172
            |...| |:|...:.......:.:|::...                         :|:|::     
Zfish   876 NSDEV-NKLGLKELSVSRTKREVGETSAA-------------------------EGKTAF----- 909

  Fly  1173 YSGQPGGYQTHHVTYSSGSKPYYGRENEDFYDEDNLQQATPGHWSSSSSSSSSSGTRRLRRSNDK 1237
                                         |.|:                       |:....:..
Zfish   910 -----------------------------FTDK-----------------------RKYTLLSCD 922

  Fly  1238 DGATEKPLQIDLNSPCQSARCKSIRCVVTNLGTEDGDAAFVAIRARMVAKTMEKLASNVPLN-VS 1301
            ||                |.|.:..|.:|.:.:.    |.:::||.:...|.  |.....|| |.
Zfish   923 DG----------------AECITFICPLTGMDSN----AVISLRAYLWNATF--LEDYAKLNYVD 965

  Fly  1302 TLAVANVTLLPFIGAPKDAIVKTHEIFYKAEPEPLQVPDVV------------PLWVVVLAACAG 1354
            .:|.|::..            ||.....:.:.||.||...|            |.||:::|...|
Zfish   966 IIAKASLDF------------KTTATNIQLKNEPSQVRVTVFPERKVAQYGGMPWWVILVAILLG 1018

  Fly  1355 ALIFLLLVWLLYKCGFFNRNRPTD 1378
            .|:..|||:||:|||||.|::..|
Zfish  1019 LLLLGLLVFLLWKCGFFKRSKYDD 1042

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ifNP_001162777.1 Int_alpha 46..110 CDD:214549 22/66 (33%)
Int_alpha 275..>316 CDD:214549 13/41 (32%)
Int_alpha 398..451 CDD:214549 28/52 (54%)
Int_alpha 466..>497 CDD:214549 17/30 (57%)
Integrin_alpha2 499..893 CDD:285619 89/435 (20%)
DUF2756 <1120..1178 CDD:298627 3/57 (5%)
itga6bNP_001013466.1 Int_alpha 37..98 CDD:214549 22/66 (33%)
Int_alpha 254..>292 CDD:214549 13/38 (34%)
Int_alpha 315..365 CDD:214549 22/57 (39%)
Int_alpha 374..425 CDD:214549 29/59 (49%)
Integrin_alpha2 468..932 CDD:285619 135/807 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574992
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D325432at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.750

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