DRSC/TRiP Functional Genomics Resources

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Protein Alignment if and ItgaPS5

DIOPT Version :9

Sequence 1:NP_001162777.1 Gene:if / 32661 FlyBaseID:FBgn0001250 Length:1396 Species:Drosophila melanogaster
Sequence 2:NP_611808.2 Gene:ItgaPS5 / 37732 FlyBaseID:FBgn0034880 Length:1018 Species:Drosophila melanogaster


Alignment Length:948 Identity:229/948 - (24%)
Similarity:375/948 - (39%) Gaps:267/948 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LILLLIAMSAHGYN--------IDLPSYVRFR--QSSNSMFGFSIAMHKGRSGFYGNQNNVSLIV 74
            ||.|.:...::..|        ||.|.:::.|  |..:|.||:|:.:..           .|:.|
  Fly     7 LIFLALKYQSNAMNFSPLPNRVIDAPKHLKTRMIQVRSSYFGYSLVIRP-----------TSIFV 60

  Fly    75 GAPKFDTSRYQQG-VTEAGGVFKCSLNDDDCKLVPFDSKGNNRNVDKEVVDRKSYQWLGATVATG 138
            |||:..::...|| :.|.|.|::|.|....|.....:.|.|           |.:||||.::..|
  Fly    61 GAPRAQSTLESQGSINETGAVYRCPLASGSCSHYVLNDKLN-----------KQFQWLGGSMDGG 114

  Fly   139 -RDSDLVVACAPRYVFHTMTPSRAFRIDPVGTCFTSHNFEEFYEVSPCRTNNWGYHRQGSC---- 198
             :|:|.::.||||:                   |...|            .|:|..| |.|    
  Fly   115 TKDTDKLLVCAPRF-------------------FVPKN------------KNYGQMR-GICYWVR 147

  Fly   199 ----------------------------QAGFSAAINGNGSRLFIGAPGSWYWQGQTY-----SI 230
                                        :.|.||.:..:.|...|||||...|:|...     .:
  Fly   148 DTVADTPPLSDVRTISLIPSQAEEHFMLELGLSAHVTDDNSGFLIGAPGVRSWKGSVLVHRGEDL 212

  Fly   231 PPDAKFPFKPPLYQPFGTGGMASSHDVTRPENQVFSTSESASVNDDSYLGYSMVTGDFDGDR--- 292
            .....:..|           |..|.|..:              |..:|:||::.:|.|..:.   
  Fly   213 AAQGSYAVK-----------MLDSWDWVK--------------NHFTYVGYALSSGYFSSNNRTS 252

  Fly   293 --------SEDVAIGMPRGGNLVGRIVVNRWNMANIFNITGRQIGEYFGYSLATSDVDGDGLDDL 349
                    |..:..|.....::||.||    ...::|:  |.|:|||||||:...|::||||.|:
  Fly   253 LLYVTTAPSSVLNTGKAYIFDVVGEIV----RKLHVFH--GEQLGEYFGYSVVAEDLNGDGLTDV 311

  Fly   350 LIGAPMYTDPDNVEGKYDVGRVYILLQGGPTE-EKRWTTEHIRDGYHSKGRFGLALTTLGDVNGD 413
            ::.||:....|:    ||||.:|:.:..|..: ||:    .||....|..|||.:|:.:||:|.|
  Fly   312 VVSAPLNALGDS----YDVGAIYVFINKGLFKFEKK----IIRLPLSSGARFGSSLSKVGDINHD 368

  Fly   414 GYGDFAVGAPYDGPEGRGVVYIFHGSPMGPLAKPSQIIKSEQLVEGAPY-PRTFGFALSGGLDMD 477
            ||.|.|||||:   .|.|.|:||.||..|...:|||.:.:... |..|| ...||..||.|.|:|
  Fly   369 GYNDLAVGAPF---AGNGAVFIFLGSEHGLRDEPSQRLDAPSR-EPGPYGAHMFGQGLSRGSDID 429

  Fly   478 GNTYPDLAVGAYSSDQVFIFKSRPVAAVNAETSFASNSKLISLDDRSCQLVRDHKKVPCMLLTTC 542
            ||.:.|||:||..::.|:::::.||..::|  :..|.|:.|..:..:            :.:|.|
  Fly   430 GNGFNDLAIGAPGAEAVYLYRAYPVVKIHA--TVRSESRAIRPEQET------------ITVTAC 480

  Fly   543 W----SYTGRYLPEQLDFDVSWLLDAKKLLNPRMF---------FLRDEG--KNIRNQTIRLNYG 592
            :    :...|.:.:|   ::::.:...:||....|         |....|  .:.||.::.::| 
  Fly   481 YRLETTSKARQMQQQ---ELTFRMTIDELLQRVSFAPMRTNEVSFQAQAGLSGSCRNFSVGVHY- 541

  Fly   593 QKYCLNETVYLLDKVQDKLTPLEVEARYNLRSSRP------------LDPMVRHRRSILEPVIDQ 645
                          .....||:::|..|.|....|            :||        |||.   
  Fly   542 --------------TGGIFTPIDLELHYELAKKIPHSHEAFCESCAVVDP--------LEPK--- 581

  Fly   646 NREIVLRDAINIQKNCGPDNICEPDLKLKVSTVD-KYLFGSPEPLVIEVFISNTNEDAFEAAFYM 709
                .....::....|.. ::|..||:|....|: .::|||.|.|.....|:|:.|.|:.|.|.:
  Fly   582 ----YATGTLSFMTGCAA-HVCVSDLQLSSKDVNSSFIFGSLEVLSFSYEITNSGEPAYVAQFNV 641

  Fly   710 VTPPDLQFRKLQQLGEKKDTPITCSPPTPENNHTLKCDI--GNPLESGKIAHFKISLVPEEKYGS 772
            .:...|.|.|:         |..|.    ..:..:.||:  |..|..|......|.....:..|.
  Fly   642 TSSARLPFAKV---------PGNCR----VRHEVMLCDLNGGRALARGDSESLTIIFDVTQLSGQ 693

  Fly   773 SSSYDFYWEANSTNLEKPGSEYDNKIRQSVGIWVDTDLDIKGTSLPDYQLYKADDYKELENATKE 837
            |.:.    ||..::.....:..||.:..::.:....::|..|..:..:            .|.||
  Fly   694 SLTI----EAAVSSAGMDQNPKDNTMSTTISLREYAEIDASGGPIDGH------------IALKE 742

  Fly   838 DDIGPQVVHIYEIRNNRPSIIEEAEVFIHLPYE-TIVG 874
            .....:|.:.||.:::.||||:|..|::.:|.. |:.|
  Fly   743 YPYSAEVNNSYEFKSHGPSIIDELTVYVDVPIAYTVTG 780

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ifNP_001162777.1 Int_alpha 46..110 CDD:214549 17/64 (27%)
Int_alpha 275..>316 CDD:214549 11/51 (22%)
Int_alpha 398..451 CDD:214549 27/52 (52%)
Int_alpha 466..>497 CDD:214549 15/30 (50%)
Integrin_alpha2 499..893 CDD:285619 80/407 (20%)
DUF2756 <1120..1178 CDD:298627
ItgaPS5NP_611808.2 VCBS 302..375 CDD:338792 31/80 (39%)
Int_alpha 351..403 CDD:214549 28/54 (52%)
Int_alpha 417..463 CDD:214549 18/47 (38%)
Integrin_alpha2 451..836 CDD:337057 80/407 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439844
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D12256at50557
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23220
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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