DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment if and ITGAL

DIOPT Version :9

Sequence 1:NP_001162777.1 Gene:if / 32661 FlyBaseID:FBgn0001250 Length:1396 Species:Drosophila melanogaster
Sequence 2:NP_002200.2 Gene:ITGAL / 3683 HGNCID:6148 Length:1170 Species:Homo sapiens


Alignment Length:1123 Identity:259/1123 - (23%)
Similarity:400/1123 - (35%) Gaps:393/1123 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 ITSLILLLIA-----MSAHGYNIDLPSYVRFRQS-----SNSMFGFSIAMHKGRSGFYGNQNNVS 71
            ||.:.:.|::     ..|..||:|    ||..:|     :...||:.:..       .||    .
Human     6 ITVMAMALLSGFFFFAPASSYNLD----VRGARSFSPPRAGRHFGYRVLQ-------VGN----G 55

  Fly    72 LIVGAPKFDTSRYQQGVTEAGGVFKCSLNDDDCKLVPFDSKGNNRNVDKEVVDRKSYQWLGATVA 136
            :|||||....|        .|.:::|......|  :|...:|:|          .:.::||.|:|
Human    56 VIVGAPGEGNS--------TGSLYQCQSGTGHC--LPVTLRGSN----------YTSKYLGMTLA 100

  Fly   137 TGRDSDLVVACAPRYVFHTMTPSRAFRIDPVGTCFTSHNFEEFYEVSPC---RTNNWGYHRQGSC 198
            |......::||.|..       ||        ||     .:..|....|   |.|..|...||  
Human   101 TDPTDGSILACDPGL-------SR--------TC-----DQNTYLSGLCYLFRQNLQGPMLQG-- 143

  Fly   199 QAGFSAAINGNGSRLFI--GAPG-----------------------SWYWQGQTYSIPPDAKFPF 238
            :.||...|.||...:|:  |:..                       |:.:....:|.....:|.|
Human   144 RPGFQECIKGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDF 208

  Fly   239 ------KPP------------LYQPFG----------------------------------TGGM 251
                  |.|            |...||                                  :|.:
Human   209 SDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNI 273

  Fly   252 ASSHDVTR---PENQVFSTSES------------------------------------------- 270
            .::.|:.|   ...:.|.|.||                                           
Human   274 DAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLFTELQKKIYVIEGTS 338

  Fly   271 -------------------------------------------ASVNDDS--------------Y 278
                                                       |.:.||:              |
Human   339 KQDLTSFNMELSSSGISADLSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEVRAGY 403

  Fly   279 LGYSMVTGDFDGDRSEDVAIGMPRGGNLVGRIVV-------NRWNMANIFNITGRQIGEYFGYSL 336
            |||: ||......::..:|.|.||..:: ||:::       ..|  :.:..|.|.|||.|||..|
Human   404 LGYT-VTWLPSRQKTSLLASGAPRYQHM-GRVLLFQEPQGGGHW--SQVQTIHGTQIGSYFGGEL 464

  Fly   337 ATSDVDGDGLDD-LLIGAPMYTDPDNVEGKYDVGRVYIL------------LQGGPTEEKRWTTE 388
            ...|||.||..: ||||||::      .|:...|||:|.            |||.|         
Human   465 CGVDVDQDGETELLLIGAPLF------YGEQRGGRVFIYQRRQLGFEEVSELQGDP--------- 514

  Fly   389 HIRDGYHSKGRFGLALTTLGDVNGDGYGDFAVGAPYDGPEGRGVVYIFHGSPMGPLAKPSQIIKS 453
                || ..||||.|:|.|.|:||||..|.|||||.   |.:|.||||:|...|...:|||.|:.
Human   515 ----GY-PLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEG 571

  Fly   454 EQLVEGAPYPRTFGFALSGGLDMDGNTYPDLAVGAYSSDQVFIFKSRPVAAVNAETSFASNSKLI 518
            .|::.|..:   ||.::.|..|::|:...|:||||.|  |:.:..||||  |:..|..:.:...|
Human   572 TQVLSGIQW---FGRSIHGVKDLEGDGLADVAVGAES--QMIVLSSRPV--VDMVTLMSFSPAEI 629

  Fly   519 SLDDRSCQLVRDHKKVPCMLLTTCW-------SYTGRYLPEQLDFDVSWLLDAKKLLNPRMFFLR 576
            .:.:..|.....:|....:.:|.|:       .:.|| |...|.:.:.  ||..:.....:|   
Human   630 PVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGR-LVANLTYTLQ--LDGHRTRRRGLF--- 688

  Fly   577 DEGKNIRNQTIRLNYGQKYCLNETVYLLDKVQDKLTPLEVEARYNL--RSSRPLDPMVRHRRSIL 639
            ..|::...:.|.:..... |.:.:.:....|||.::|:.|...::|  ....|.|...       
Human   689 PGGRHELRRNIAVTTSMS-CTDFSFHFPVCVQDLISPINVSLNFSLWEEEGTPRDQRA------- 745

  Fly   640 EPVIDQNREI--VLRDAIN-------IQKNCGPDNICEPDLKLKVS-----TVDKYLFGSPEPLV 690
                 |.::|  :||.:::       .:||||.|..||.:|::..|     .:....|.|   |.
Human   746 -----QGKDIPPILRPSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARSRALRLTAFAS---LS 802

  Fly   691 IEVFISNTNEDAFEAAFYMVTPPDLQFRKLQQLGEKKDTPITCSPPTPEN---NHTLKCDIGNPL 752
            :|:.:||..|||:.....:..||.|.|||::.|......|::|.....|:   :..|.|::.:|:
Human   803 VELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPI 867

  Fly   753 ESGKIAH-----FKISLVPEEKYGSSSSYDFYWEANST-NLEKPGSEYDNKIRQSVGIWVDTDLD 811
              .|..|     ...:.:....:|.|...    .||.| |.|......||.....:.|....::.
Human   868 --FKAGHSVALQMMFNTLVNSSWGDSVEL----HANVTCNNEDSDLLEDNSATTIIPILYPINIL 926

  Fly   812 IKGTSLPDYQLYKADDYKELENATKEDDIGP---QVVHIYEIRNNRPSIIEEAEVFIHLP-YETI 872
            |:...  |..||.:...|           ||   ||.|:|::| .:|||.:.     ::| .|.:
Human   927 IQDQE--DSTLYVSFTPK-----------GPKIHQVKHMYQVR-IQPSIHDH-----NIPTLEAV 972

  Fly   873 VGDPLMYLLNQPETGGKI 890
            ||.|      ||.:.|.|
Human   973 VGVP------QPPSEGPI 984

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ifNP_001162777.1 Int_alpha 46..110 CDD:214549 14/63 (22%)
Int_alpha 275..>316 CDD:214549 14/61 (23%)
Int_alpha 398..451 CDD:214549 29/52 (56%)
Int_alpha 466..>497 CDD:214549 12/30 (40%)
Integrin_alpha2 499..893 CDD:285619 100/428 (23%)
DUF2756 <1120..1178 CDD:298627
ITGALNP_002200.2 FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 31..82 15/71 (21%)
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 83..141 19/87 (22%)
vWA_integrins_alpha_subunit 155..323 CDD:238746 18/167 (11%)
I-domain (insertion domain) 170..349 16/178 (9%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 390..445 12/56 (21%)
Int_alpha 402..451 CDD:214549 13/52 (25%)
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 446..506 25/65 (38%)
Int_alpha 456..503 CDD:214549 22/52 (42%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 507..563 32/72 (44%)
Int_alpha 517..569 CDD:214549 29/54 (54%)
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 567..627 22/66 (33%)
Int_alpha 579..>603 CDD:214549 8/26 (31%)
Integrin_alpha2 612..983 CDD:285619 98/425 (23%)
GFFKR motif 1115..1119
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1128..1170
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165141999
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.740

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