DRSC/TRiP Functional Genomics Resources

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Protein Alignment if and ItgaPS4

DIOPT Version :9

Sequence 1:NP_001162777.1 Gene:if / 32661 FlyBaseID:FBgn0001250 Length:1396 Species:Drosophila melanogaster
Sequence 2:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster


Alignment Length:1098 Identity:266/1098 - (24%)
Similarity:453/1098 - (41%) Gaps:239/1098 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LILLLIAMSA--HGYNI--------DLPSYVRFRQSSNSMFGFSIAMHKGRSGFYGNQNNVSLIV 74
            |:::|:|:.:  :.|||        :.|.....|:|  |.||||:.:.:           .|::|
  Fly     5 LVIVLLALQSEINAYNISPYPNSVLNFPELEGNRRS--SYFGFSLVIRE-----------KSIMV 56

  Fly    75 GAPKFDTS-RYQQGVTEAGGVFKCSL-NDDDCKLVPFDSKGNNRNVDKE---VVDRKSYQWLGAT 134
            .||:.::| ..|:.::|.|.:|:|.. :.::|.....|:|||.:.:..:   ....|.::|||..
  Fly    57 AAPRANSSLEAQRNISEPGVIFRCYFESGNNCSPYNIDTKGNYKGMPNDGLLTAKNKDFRWLGGA 121

  Fly   135 VATG-RDSDLVVACAPRYVFHTMTPSRAFRIDPVGTCF----TSHNFE--EFYEVSPCR------ 186
            :..| ||||..:.||||  |:::.....:.   .|.|:    |..|.:  |..|..|.|      
  Fly   122 MDGGTRDSDKFLVCAPR--FYSINNENDYN---NGMCYWLSDTPKNIDSTEVMEKWPLRIEKKQV 181

  Fly   187 -----TNNWGYHRQGSCQAGFSAAINGNGSRLFIGAPGSWYWQGQTY--SIPPDAKFPFKPPLYQ 244
                 ||...|:..|  :.|.||.::.:.|:|.:||||...|:|..:  ...|..|         
  Fly   182 LKLADTNLIPYYSMG--ELGLSAHVSDDNSKLLMGAPGIDQWKGSVHLKQEVPSIK--------- 235

  Fly   245 PFGTGGMASSHDVTRPENQVFSTSESASVNDDSYLGYSMVTGDFDGDRSEDV--AIGMPRGGNLV 307
             ..:|......:..|..|:.....::....:.||.||::.:|.||......|  ....|||.|..
  Fly   236 -TSSGRQRRGMNTNRKCNECNPEPKNFGQEEFSYFGYAVSSGYFDSSNLSTVLYVATAPRGNNQF 299

  Fly   308 GRIVVNRWNMANIFNI-----------TGRQIGEYFGYSLATSDVDGDGLDDLLIGAPMYTDPDN 361
            |.        |.||:|           .|...|||||||:...|::|||..|::|.||:|.    
  Fly   300 GE--------AYIFDIYEDSIYKYHEFRGNHFGEYFGYSVLAEDLNGDGKTDVIISAPLYA---- 352

  Fly   362 VEGKYDVGRVYILL-QGGPTEEKRWTTEHIRDGYHSKGRFGLALTTLGDVNGDGYGDFAVGAPYD 425
            :...||.|.:|:.: :|..|.|:|    .||....|.||||..|:.:||:|.|||.|.|||||: 
  Fly   353 LRNSYDDGAIYVFINKGSFTFEER----IIRSPAGSGGRFGTTLSRIGDINKDGYNDVAVGAPF- 412

  Fly   426 GPEGRGVVYIFHGSPMGPLAKPSQII--KSEQLVEGAPYPRTFGFALSGGLDMDGNTYPDLAVGA 488
              .|.|.|:|:.||..|....|||.:  .|:|..:...|  .||..||.|.|:|||.:.|.|:||
  Fly   413 --AGNGSVFIYLGSENGLRDPPSQCLDAPSQQPSKYGSY--MFGHGLSRGSDIDGNGFNDFAIGA 473

  Fly   489 YSSDQVFIFKSRPVAAVNAETSFASNSKLISLDDRSCQLVRDHKKVPCMLLTTCWSYTGR----- 548
            .:::.|:::::.||..::|    ....||.:::.       :.::|.   :|.|:..:.:     
  Fly   474 PNAEAVYLYRAYPVVKIHA----IIKPKLQNVNP-------EEERVN---ITVCYRLSSKSDSKA 524

  Fly   549 --YLPEQLDFDVSWLLDAKKLLNPRMFFLRDEGKNIRNQTIRLNYGQKYCLNETVYLLDKVQDKL 611
              .:.::|...:.  :|.|..:...:|   ||....:.......:.::.| :|....:|| :.|.
  Fly   525 KALMEQELVIRID--IDTKSKIKLAVF---DEEHGSQMSFKAKAFHEEIC-SEFQIEMDK-RAKF 582

  Fly   612 TPLEVEARYNLRSSRPLDPMVRHRRSILE--PVIDQNREIVLRDAINIQKNCGPDNICEPDLKLK 674
            ||:.:|.:|.|....|      :.....|  .|:|......:.:.|.....|..| :|..|||:.
  Fly   583 TPIALEMQYELSKKIP------NSGDFCEDCAVVDPAEPKFVTEYITFNTGCATD-VCVADLKIS 640

  Fly   675 -VSTVDKYLFGSPEPLVIEVFISNTNEDAFEAAFYMVTPPDLQFRKLQQLGEKKDTPITCSPPTP 738
             ::.....:.|:...|.:...|:|..|.|:...|.:.....|...::         |..|.    
  Fly   641 CINASSTLVLGTTAVLRLTYNITNNGEFAYHPKFSVTNSAGLSLAQV---------PGNCK---- 692

  Fly   739 ENNHTLKCDI--GNPLESGKIAHFKISLVPEEKYGSS--------SSYDFYWEANSTNLEKPGSE 793
            .|...:.||:  |..:..|......||....:..|.|        |:.|   |:|..|       
  Fly   693 VNEAVMVCDLNHGQRMAKGDTDSLTISFDVRQLRGRSLEIQAEVLSARD---ESNPEN------- 747

  Fly   794 YDNKIRQSVGIWVDTDLDIKGTSLPDYQLYKADDYKELENATKEDDIGPQVVHIYEIRNNRPSII 858
              ||:...:.:....|:.:.|....|:.:.|...|.            .:||:.|||:::.||.:
  Fly   748 --NKLTNVLSLREKADIYVSGVQTNDHVVLKESPYT------------AEVVNYYEIKSHGPSTL 798

  Fly   859 EEAEVFIHLP--YETIVGDPLMYLLNQPETGGKIQCDDVAFNEYNLLLDEKLVKKSYLQAQGAIW 921
            |...|.:::|  |:|.....:.:::.   :..|||      ::|    ..|::..:::....|:.
  Fly   799 ENLTVSLYIPVAYKTPDSTNVKHIVT---SSPKIQ------SKY----AHKIMPINFIDQNNALA 850

  Fly   922 NSAQVSGQSSS--------SSSSGGASVHIEKARGEGF------VRGVLVSNSTDA--------- 963
            |:..:....|:        ..:.|..|..:|:......      |...||.|..|.         
  Fly   851 NNFAIDHDQSTLLFSATPQHENVGNLSGIVEQNPSISLLNEDLPVNNTLVLNCQDTNVTLCVPVE 915

  Fly   964 -----GDKLSPKQVEQRRQEDTLEALGDAS------FVHRDRASQAVQEPQVNQTSFT 1010
                 |.:|.|:::.......|:. |.||.      .:..|.....:.:|.:  :|||
  Fly   916 IRLENGLQLKPEELMNMTVSFTVN-LKDADDIWEYFVIQTDLKVHKIGDPTL--SSFT 970

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ifNP_001162777.1 Int_alpha 46..110 CDD:214549 16/65 (25%)
Int_alpha 275..>316 CDD:214549 13/42 (31%)
Int_alpha 398..451 CDD:214549 27/52 (52%)
Int_alpha 466..>497 CDD:214549 14/30 (47%)
Integrin_alpha2 499..893 CDD:285619 81/415 (20%)
DUF2756 <1120..1178 CDD:298627
ItgaPS4NP_611025.2 VCBS 335..408 CDD:290251 32/80 (40%)
Int_alpha 384..434 CDD:214549 26/52 (50%)
Int_alpha 447..>492 CDD:214549 17/46 (37%)
Integrin_alpha2 484..808 CDD:285619 75/388 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439845
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D12256at50557
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23220
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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