DRSC/TRiP Functional Genomics Resources

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Protein Alignment if and Gpld1

DIOPT Version :9

Sequence 1:NP_001162777.1 Gene:if / 32661 FlyBaseID:FBgn0001250 Length:1396 Species:Drosophila melanogaster
Sequence 2:NP_001093982.1 Gene:Gpld1 / 291132 RGDID:631371 Length:843 Species:Rattus norvegicus


Alignment Length:409 Identity:100/409 - (24%)
Similarity:151/409 - (36%) Gaps:134/409 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   227 TYSIPPDAKFPFKPPLYQPFGTGGM-------------------ASSHDVTRPENQVFSTSESAS 272
            |||    .|.||....:|.:..||:                   ..:.|...|||.:|.:.:.  
  Rat   231 TYS----TKSPFLVEQFQDYFLGGLDDMAFWSTNIYRLTSFMLENGTSDCNLPENPLFISCDG-- 289

  Fly   273 VNDDSYLGYSMV-TGDFDGDRSEDVAIGMPRGGNLVGRIV---VNRW--------------NMAN 319
             ..:..|..|.| ..||..:.:..::..:.:..|...|.|   ...|              |:..
  Rat   290 -RKNHTLSSSKVQKNDFHRNLTMFISKDIRKNLNYTERGVFYSTGSWAPESVTFMYQTLERNLRM 353

  Fly   320 IFNITGRQ----------IGEY--------FGYSLATSDVDGDGLDDLLIGAPMYTDPDNVEGKY 366
            :|  ||..          ...|        .|:.:|::|::.||..||::|||.|:.|    |::
  Rat   354 MF--TGNSQTALKHVSSPSASYTLSVPYARLGWVMASADLNQDGHGDLVVGAPGYSHP----GRF 412

  Fly   367 DVGRVYILL---QGGPTEEKRWTTE-H-IRDGYHSKGRFGLALTTLGDVNGDGYGDFAVGAPYDG 426
            .:|||||:.   .|.|..:.....| | :.:|:...||||.||..| |.|.||..|.|||||..|
  Rat   413 QIGRVYIIYGNDLGLPPIDLDLDKEAHGVLEGFQPSGRFGSALAVL-DFNKDGLPDLAVGAPSVG 476

  Fly   427 PEGR----GVVYIFHGSPMGPL-AKPSQIIKSEQLVEGAPYPRTF---GFALSGGLDMDGNTYPD 483
             .|:    |.||:::||..|.| :.|:..|..:.         |:   |:||... |.||:...|
  Rat   477 -SGQLTYNGSVYVYYGSQQGRLSSSPNITISCKD---------TYCNLGWALLAA-DADGDGQHD 530

  Fly   484 LAV-------GAYSSDQVFIFKSRPVAAVNAETSFASNSKLISLDDRSCQLVRDHKKVPCMLLTT 541
            |.:       |......|..|.|.|         ..::.:.::||:..                 
  Rat   531 LVISSPFAPGGGKQRGIVAAFYSHP---------RRNDKESLTLDEAD----------------- 569

  Fly   542 CWSYTGRYLPEQLDFDVSW 560
             |...|       :.|.||
  Rat   570 -WKVNG-------EEDFSW 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ifNP_001162777.1 Int_alpha 46..110 CDD:214549
Int_alpha 275..>316 CDD:214549 9/58 (16%)
Int_alpha 398..451 CDD:214549 27/57 (47%)
Int_alpha 466..>497 CDD:214549 10/40 (25%)
Integrin_alpha2 499..893 CDD:285619 9/62 (15%)
DUF2756 <1120..1178 CDD:298627
Gpld1NP_001093982.1 Zn_dep_PLPC 28..220 CDD:395710
FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 368..429 20/64 (31%)
Int_alpha 378..435 CDD:214549 20/60 (33%)
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 435..498 28/64 (44%)
Int_alpha 447..503 CDD:214549 27/57 (47%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 500..560 16/78 (21%)
FG-GAP 515..548 CDD:396418 9/33 (27%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 564..625 7/42 (17%)
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 635..695
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 707..773
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 791..843
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D743479at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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