DRSC/TRiP Functional Genomics Resources

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Protein Alignment if and itga10

DIOPT Version :10

Sequence 1:NP_523378.2 Gene:if / 32661 FlyBaseID:FBgn0001250 Length:1396 Species:Drosophila melanogaster
Sequence 2:XP_031747324.1 Gene:itga10 / 101734246 XenbaseID:XB-GENE-6049791 Length:1163 Species:Xenopus tropicalis


Alignment Length:53 Identity:16/53 - (30%)
Similarity:21/53 - (39%) Gaps:11/53 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 HLQGQL---QSPTGIALLPARRASRKEKTASQPGHPKFGGLIFFCFYQLSNII 60
            |:..||   ||..|...|.|  |.:...||      .||....|.|.:..::|
 Frog   107 HIIEQLRFRQSSVGNIFLSA--AFQFSYTA------VFGAYTAFLFIRTGHLI 151

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ifNP_523378.2 Int_alpha 46..110 CDD:214549 4/15 (27%)
Int_alpha 275..>316 CDD:214549
Int_alpha 398..451 CDD:214549
Int_alpha 466..>497 CDD:214549
Integrin_alpha2 500..892 CDD:462478
Glutenin_hmw <1121..1216 CDD:367362
itga10XP_031747324.1 vWA_integrins_alpha_subunit 165..345 CDD:238746
Int_alpha 481..>528 CDD:214549
Int_alpha 544..598 CDD:214549
Integrin_alpha2 642..988 CDD:462478
Blue background indicates that the domain is not in the aligned region.

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