DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment if and itga5

DIOPT Version :9

Sequence 1:NP_001162777.1 Gene:if / 32661 FlyBaseID:FBgn0001250 Length:1396 Species:Drosophila melanogaster
Sequence 2:XP_031753051.1 Gene:itga5 / 100492002 XenbaseID:XB-GENE-493953 Length:1046 Species:Xenopus tropicalis


Alignment Length:1390 Identity:351/1390 - (25%)
Similarity:550/1390 - (39%) Gaps:389/1390 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LILLLIAMSAHGYNIDLPSYVRFRQSSNSMFGFSIAMHKGRSGFY-GNQNNVSLIVGAPKFDTSR 83
            |..||...|..|:|:.:.....:..:..|.||||:       .|| .:..::|::|||||.:|| 
 Frog    17 LCALLTFSSVRGFNLAVEQPAVYTGAEGSFFGFSV-------DFYLPDAQSISILVGAPKANTS- 73

  Fly    84 YQQGVTEAGGVFKC--SLNDDDCKLVPFDSKGNNR-----NVDKEVVDRKSYQWLGATVATGRDS 141
             |.||.|.|.||.|  ..|..:|..:.|||:|:.:     :...|.::.||.||.||||.:  ..
 Frog    74 -QPGVYEGGAVFYCPWQRNGINCTEISFDSQGDRQRELHDSPQPEHMESKSEQWFGATVRS--HG 135

  Fly   142 DLVVACAPRYVFHTMTPSRAFRIDPVGTCFTS-HNFEEFYEVSPCRTNNWGYHRQGSCQAGFSAA 205
            ..::||||||.:.|....:  ..||||||:.| :||..|.|.|||||:......||.||.||||.
 Frog   136 KTILACAPRYSWRTKKDEK--HSDPVGTCYLSVNNFTTFVEYSPCRTDFSDAAGQGYCQGGFSAE 198

  Fly   206 INGNGSRLFIGAPGSWYWQGQTYSIPPD----AKFPFKPPLYQPFGTGGMASSHDVTRPENQVFS 266
            ...:| |:.:|.|||::||||..:...|    |.:|                .:.|...:.|: .
 Frog   199 FTKSG-RVLLGGPGSYFWQGQVITATQDEIQEAYYP----------------EYFVLEYKKQM-Q 245

  Fly   267 TSESASVNDDSYLGYSMVTGDFDGDRSEDVAIGMPRGGNLVGRI-VVNRWNMANIFNITGRQIGE 330
            |.::||..||||.|||:..|:|.||.:||..:|:|:|....|.: ::|..::.:::|.:|.|:..
 Frog   246 TRQAASSYDDSYFGYSVAVGEFSGDDTEDFVVGVPKGNMTYGYVTILNGTDLRSLYNFSGEQMAS 310

  Fly   331 YFGYSLATSDVDGDGLDDLLIGAPMYTDPDNVEGKYDVGRVYILLQGGPTEEKRWTTEHIRDGYH 395
            |||||::.:|::||||||||||||:..|..:.....:||||||.|||   :....|...|..|..
 Frog   311 YFGYSVSATDLNGDGLDDLLIGAPLLMDRTHDGRVQEVGRVYIYLQG---DRMEGTPNLILTGTE 372

  Fly   396 SKGRFGLALTTLGDVNGDGYGDFAVGAPYDGPEGRGVVYIFHGSPMGPLAKPSQIIKSEQLVEGA 460
            ..||||.::.:|||::.||:.|.|:|||:.|...||.|:||:|.|.|..:||||:::.:.  ..:
 Frog   373 EYGRFGSSIASLGDLDQDGFNDVAIGAPFGGEAQRGAVFIFNGQPGGVDSKPSQVLQGQW--GSS 435

  Fly   461 PYPRTFGFALSGGLDMDGNTYPDLAVGAYSSDQVFIFKSRPVAAVNAETSFASNSKLISLDDRSC 525
            ..|..||.:..||.|:|||.||||.|||:..|:..:::.||:  ::|..|.:.:..:.:.::::|
 Frog   436 QQPSFFGLSTRGGQDLDGNGYPDLIVGAFGVDKTLVYRGRPI--IHASASLSISPNMFNPEEKTC 498

  Fly   526 QLVRDHKKVPCMLLTTCWSYTGRYLPEQLDFDVSWLLDAKKLLN--PRMFFLRDEGKNIRNQTIR 588
            .|..:...|.|:.|:.|.:.:|:::|..:...|...||..|...  .|..||:.....: .|||.
 Frog   499 TLEGNTSAVSCINLSFCLNASGKHVPNSIGIKVELQLDQTKQKGAVKRALFLKSRQPQL-TQTIH 562

  Fly   589 -LNYGQKYCLNETVYLLD--KVQDKLTPLEVEARYNLRSSRPLDPMVRHRRSILEPVIDQNREIV 650
             ||.||:.|....:||.:  :.:|||:|:.|...::|   .||.|...|.   |.|:.:...:..
 Frog   563 LLNGGQEECRAMKIYLREESEFRDKLSPIYVGLNFSL---DPLAPADAHG---LMPIFNYKTKNY 621

  Fly   651 LRDAINIQKNCGPDNICEPDLKLKVSTVDKYLF-GSPEPLVIEVFISNTNEDAFEAAFYMVTPPD 714
            :.....||.:||.||||.|||||.||...|.:: |....|.:.....|....|:||..|:..||:
 Frog   622 IEQKAQIQLDCGEDNICVPDLKLNVSGDRKSVYLGDENFLTLFFNAQNLGGGAYEAELYVTLPPE 686

  Fly   715 LQFRKLQQLGEKKDTPITCSPPTPENNHTLKCDIGNPLESGKIAHFKISLVPEEKYGSSSSYDFY 779
            .::..:.:..|.. ..:.|:.........:.||:|||:::|......:.........||.:..|.
 Frog   687 AEYSGIVRNNENL-LILPCAYELENQTRLVICDLGNPMKAGASLAGGLRFTVPHLRDSSHNVQFD 750

  Fly   780 WEANSTNLEKPGSEYDNKIRQSVGIWVDTDLDIKGTSLPDYQLYKADDYKELENATKEDDIGPQV 844
            ::..|.|.....||   .:..::.:...:.:...|.|.||...:...::|...|.....:.||:|
 Frog   751 FQIRSKNQNNSQSE---TVHLALNVEAHSVVSFFGASKPDSVNFPVANWKPGRNPMTGQEAGPEV 812

  Fly   845 VHIYEIRNNRPSIIEEAEVFIHLPYETIVGDPLMYLLNQPETGGKIQCDDVAFNEYNLLLDEKLV 909
            .|:||:.|..||.|....:.:..|.. :..:..||::                            
 Frog   813 KHVYELVNFGPSSISHGILELRCPMR-VNKEYAMYVM---------------------------- 848

  Fly   910 KKSYLQAQGAIWNSAQVSGQSSSSSSSGGASVHIEKARGEGFVRGVLVSNSTDAGDKLSPKQVEQ 974
                         |..|.|.::.:|:....::|::             .:.||.....:||.|..
 Frog   849 -------------SYAVQGLTNCTSNHPDNALHLQ-------------HSPTDHPPTPNPKPVHH 887

  Fly   975 RRQEDTLEALGDASFVHRDRASQAVQEPQVNQTSFTTYSTSSSSSGSGAPSAQLRGHSTQGHIQM 1039
            ..:.||...:..||.|.:      ..||.|:  .|                          |:..
 Frog   888 VERRDTARIISGASNVLK------CNEPHVD--CF--------------------------HLHC 918

  Fly  1040 -AGPVQHTSSS-SSSNYRSWPAQQQQQHQQLLLAGSGGSGLGSPVTFNDKSQFGGRNNNFHTGTL 1102
             .||::....: ...|:..|.                                    |.|     
 Frog   919 NVGPLEKQKRAILRVNFLIWA------------------------------------NTF----- 942

  Fly  1103 DLGTLNRGNVDNELYRSQGQYQNPSQSLGQSQGQFQANANQGHYQGQNQAQFQARNPGFQGQTSY 1167
                                                               .|..|.||    :.
 Frog   943 ---------------------------------------------------MQKENQGF----NL 952

  Fly  1168 QGQTQYSGQPGGYQTHHVTYSSGSKPYYGRENEDFYDEDNLQQATPGHWSSSSSSSSSSGTRRLR 1232
            |.:..|..|...|:.....|..|:.                |..|..||:...||..        
 Frog   953 QCEALYHIQRLPYKILPHVYPKGTH----------------QVDTAVHWTKPESSYG-------- 993

  Fly  1233 RSNDKDGATEKPLQIDLNSPCQSARCKSIRCVVTNLGTEDGDAAFVAIRARMVAKTMEKLASNVP 1297
                                                                             
 Frog   994 ----------------------------------------------------------------- 993

  Fly  1298 LNVSTLAVANVTLLPFIGAPKDAIVKTHEIFYKAEPEPLQVPDVVPLWVVVLAACAGALIFLLLV 1362
                                                        ||||:::||...|.|:..||:
 Frog   994 --------------------------------------------VPLWIIILAILIGLLLLALLI 1014

  Fly  1363 WLLYKCGFFNRNRPTDHSQERQPLR 1387
            ::|||.|||.|:.|...:.|:..|:
 Frog  1015 YVLYKLGFFKRSLPYGTAMEKAELK 1039

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ifNP_001162777.1 Int_alpha 46..110 CDD:214549 25/66 (38%)
Int_alpha 275..>316 CDD:214549 18/41 (44%)
Int_alpha 398..451 CDD:214549 27/52 (52%)
Int_alpha 466..>497 CDD:214549 16/30 (53%)
Integrin_alpha2 499..893 CDD:285619 100/399 (25%)
DUF2756 <1120..1178 CDD:298627 7/57 (12%)
itga5XP_031753051.1 Int_alpha 44..101 CDD:214549 25/65 (38%)
Int_alpha 254..297 CDD:214549 18/42 (43%)
Int_alpha 308..366 CDD:214549 29/60 (48%)
Int_alpha 374..428 CDD:214549 27/53 (51%)
Int_alpha 439..483 CDD:214549 19/45 (42%)
Integrin_alpha2 475..918 CDD:400650 120/544 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 175 1.000 Domainoid score I3587
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 491 1.000 Inparanoid score I1380
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D325432at33208
OrthoFinder 1 1.000 - - FOG0001619
OrthoInspector 1 1.000 - - otm48649
Panther 1 1.100 - - O PTHR23220
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X587
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

Return to query results.
Submit another query.