Sequence 1: | NP_001162777.1 | Gene: | if / 32661 | FlyBaseID: | FBgn0001250 | Length: | 1396 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002932062.3 | Gene: | itga4 / 100487924 | XenbaseID: | XB-GENE-960093 | Length: | 1030 | Species: | Xenopus tropicalis |
Alignment Length: | 922 | Identity: | 233/922 - (25%) |
---|---|---|---|
Similarity: | 403/922 - (43%) | Gaps: | 182/922 - (19%) |
- Green bases have known domain annotations that are detailed below.
Fly 18 TSLILLLIAMSAHG-YNIDLPSYVRFRQSSNSMFGFSIAMHKGRSGFYGNQNNVSLIVGAPKFDT 81
Fly 82 SRYQQGVTEAGGVFKCSLNDD---DCKLVPFDSKGNNRNVDKEVVDRKSYQWLGATVATGRDSD- 142
Fly 143 LVVACAPRYV-FHTMTPSRAFRIDPVGTCF-TSHNF--EEFYEVSPC---RTNNWGYHRQGSCQA 200
Fly 201 GFSAAINGNGSRLFIGAPGSWYWQGQTYSIPPDAKFPFKPPLYQPFGTGGMASSHDVTRPENQVF 265
Fly 266 STSESA---------SVNDDSYLGYSMVTGDFDGDRSEDVAIGMPRGGNLVGRIVVNRW---NMA 318
Fly 319 NIFNITGRQIGEYFGYSLATSDVDGDGLDDLLIGAPMYTDPDNVEGKYDVGRVYILLQ--GGPTE 381
Fly 382 EKRWTTEHIRDGYHSKGRFGLALTTLGDVNGDGYGDFAVGAPYDGPEGRGVVYIFHGSPMGPLAK 446
Fly 447 PSQIIKSEQLVEGAPYPRTFGFALSGGLDMDGNTYPDLAVGAYSSDQVFIFKSRPVAAVNAETSF 511
Fly 512 ASNSKLISLDDRSCQLVRDHKKVPCMLLTTCWSYTGRYLPEQ--LDFDVSWLLDAKKLLNPRMFF 574
Fly 575 LRDEGKNIRNQTIRLNYGQKYCLNETVYLLDKVQDKLTPLEVEARYNL-------RSSRPLDPMV 632
Fly 633 RHRRSILEPVIDQ--NREIVLRDAINIQKNCGPDNICEPDLKL--KVS---TVDKYLF---GSPE 687
Fly 688 PLVIEVFISNTNEDAFEAAFYMVTPPDLQFRKLQQLGEKKDTPITCSPPTPENNHT-LKCDIGNP 751
Fly 752 LESGKIAHFKISLVPEEKYGSSSSYDFYWEANSTNLEKPGSEYDNKIRQSVG---------IW-- 805
Fly 806 ---------VDTDLDIKGTSLPDYQLYKADDYKELENATKEDD-----IGPQVVHIYEIRNNRPS 856
Fly 857 IIEEAEVFIHLP 868 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
if | NP_001162777.1 | Int_alpha | 46..110 | CDD:214549 | 18/66 (27%) |
Int_alpha | 275..>316 | CDD:214549 | 13/43 (30%) | ||
Int_alpha | 398..451 | CDD:214549 | 21/52 (40%) | ||
Int_alpha | 466..>497 | CDD:214549 | 15/30 (50%) | ||
Integrin_alpha2 | 499..893 | CDD:285619 | 86/415 (21%) | ||
DUF2756 | <1120..1178 | CDD:298627 | |||
itga4 | XP_002932062.3 | Int_alpha | 47..98 | CDD:214549 | 17/59 (29%) |
Int_alpha | 301..347 | CDD:214549 | 20/51 (39%) | ||
Int_alpha | 363..415 | CDD:214549 | 21/52 (40%) | ||
Int_alpha | 426..>464 | CDD:214549 | 17/37 (46%) | ||
Integrin_alpha2 | 460..899 | CDD:400650 | 86/415 (21%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |