DRSC/TRiP Functional Genomics Resources

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Protein Alignment if and itga4

DIOPT Version :9

Sequence 1:NP_001162777.1 Gene:if / 32661 FlyBaseID:FBgn0001250 Length:1396 Species:Drosophila melanogaster
Sequence 2:XP_002932062.3 Gene:itga4 / 100487924 XenbaseID:XB-GENE-960093 Length:1030 Species:Xenopus tropicalis


Alignment Length:922 Identity:233/922 - (25%)
Similarity:403/922 - (43%) Gaps:182/922 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 TSLILLLIAMSAHG-YNIDLPSYVRFRQSSNSMFGFSIAMHKGRSGFYGNQNNVSLIVGAPKFDT 81
            |.::|..:.:...| ||||..|.|.|:.|..|:||||:.:|....|.:       ::||||:  :
 Frog    18 TGIVLYTVTIKTAGSYNIDESSPVVFKGSQGSLFGFSVVLHSNGDGNW-------IVVGAPQ--S 73

  Fly    82 SRYQQGVTEAGGVFKCSLNDD---DCKLVPFDSKGNNRNVDKEVVDRKSYQWLGATVATGRDSD- 142
            |...:.||..|.:.||.:..:   .|.::...:. |.....|...:.:..||||.:::.....| 
 Frog    74 SWTTKNVTNPGAILKCRIEQNPNGSCDVLELGNL-NGAKCGKTCKEEQDNQWLGVSLSRQSTKDG 137

  Fly   143 LVVACAPRYV-FHTMTPSRAFRIDPVGTCF-TSHNF--EEFYEVSPC---RTNNWGYHRQGSCQA 200
            .::||..|:. .|.|......   |.|.|: ...||  |....:.||   ....:| ...|||||
 Frog   138 QILACGHRWKNIHFMLSDHKL---PYGVCYGIPANFRTELSKRICPCYKDHVRKFG-DSYGSCQA 198

  Fly   201 GFSAAINGNGSRLFIGAPGSWYWQGQTYSIPPDAKFPFKPPLYQPFGTGGMASSHDVTRPENQVF 265
            |.|.....:  .:.:|||||:||.|..:                                   |:
 Frog   199 GISTFYVED--VIVMGAPGSFYWTGSIF-----------------------------------VY 226

  Fly   266 STSESA---------SVNDDSYLGYSMVTGDFDGDRSEDVAIGMPRGGNLVGRIVVNRW---NMA 318
            :|:|:.         :|...||||||:..|.|....|.:|..|.|: ....|:..:..:   .:.
 Frog   227 NTTENTIKSYVDLNNAVKFGSYLGYSVGAGHFRTPNSYEVIGGAPQ-QEQTGKAYIFTYEEKQLV 290

  Fly   319 NIFNITGRQIGEYFGYSLATSDVDGDGLDDLLIGAPMYTDPDNVEGKYDVGRVYILLQ--GGPTE 381
            .:|...|:::|.|||.::...|::||||.|||:||||.:.      ..:.|||::.:.  ||..|
 Frog   291 ILFEAGGKKLGSYFGAAVCAVDLNGDGLSDLLVGAPMQST------IREEGRVFVYMNTGGGAME 349

  Fly   382 EKRWTTEHIRDGYHSKGRFGLALTTLGDVNGDGYGDFAVGAPYDGPEGRGVVYIFHGSPMGPLAK 446
            |.::.... .|.|  ..|||..:..|||::.||:.|.|:.||.:| :..|.|||::|...|....
 Frog   350 ELQFELSG-SDLY--AARFGDTIANLGDIDNDGFEDVAIAAPQEG-DLEGAVYIYNGREKGITPS 410

  Fly   447 PSQIIKSEQLVEGAPYPRTFGFALSGGLDMDGNTYPDLAVGAYSSDQVFIFKSRPVAAVNAETSF 511
            .||.::..:...|.   |.||.::|..||:|||.|.|:|:||:.||...:.::|||..::|....
 Frog   411 FSQRLQGSKFGYGL---RMFGQSISNVLDIDGNGYNDVAIGAFLSDSAVLLRTRPVIVIDASLKL 472

  Fly   512 ASNSKLISLDDRSCQLVRDHKKVPCMLLTTCWSYTGRYLPEQ--LDFDVSWLLDAKKLLNPRMFF 574
            .     ::::....:.:.:.....||.:|.|::|.|..:|..  :.::::..:..|.....|.:|
 Frog   473 P-----MTVNKTRFECMENGAPAVCMNVTICFAYKGLDVPGYIVMYYNITSDVRRKSGTPARFYF 532

  Fly   575 LRDEGKNIRNQTIRLNYGQKYCLNETVYLLDKVQDKLTPLEVEARYNL-------RSSRPLDPMV 632
            :.:...::.:.|:.::.....|.....::....:|..||:.:|:.|.|       ||:..|.|  
 Frog   533 VSNGTSDVMSGTMNIHQKSGNCKTHKAFMRKDTRDIFTPIHMESSYYLGKHIVSKRSADDLQP-- 595

  Fly   633 RHRRSILEPVIDQ--NREIVLRDAINIQKNCGPDNICEPDLKL--KVS---TVDKYLF---GSPE 687
                  |:||:.|  .:..|:.:.::..::|...| |..||::  |:|   ..:..|:   |..:
 Frog   596 ------LQPVLQQKEGKGNVITNKVHFARHCTLLN-CSADLQITGKLSFPKPFESKLYLAVGGMK 653

  Fly   688 PLVIEVFISNTNEDAFEAAFYMVTPPDLQFRKLQQLGEKKDTPITCSPPTPENNHT-LKCDIGNP 751
            .|:|.:.:.|..:|||:....:..|..|.|.|:..:.||:   |:|:....||..| |.|.:|  
 Frog   654 SLMINITLFNGGDDAFQTVLQLRLPKGLYFVKVFDMLEKE---ISCAVNKEENEQTRLDCSVG-- 713

  Fly   752 LESGKIAHFKISLVPEEKYGSSSSYDFYWEANSTNLEKPGSEYDNKIRQSVG---------IW-- 805
                   ||.:.        :.|..:|.:..:|:.|.:  :|.|..|..:|.         ||  
 Frog   714 -------HFYVD--------AFSKQEFSFLLDSSALTR--AEEDLVINATVACENEFTEDTIWNN 761

  Fly   806 ---------VDTDLDIKGTSLPDYQLYKADDYKELENATKEDD-----IGPQVVHIYEIRNNRPS 856
                     .:.||::.||..|...::          ...||:     |..::...:.:.|...|
 Frog   762 EVSFIVPTRYEIDLNVLGTVSPFSFVF----------GPHEDEPDGACIMEKIEFTFNVINAGSS 816

  Fly   857 IIEEAEVFIHLP 868
            ::..|::.|.||
 Frog   817 LVPAAKLQISLP 828

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ifNP_001162777.1 Int_alpha 46..110 CDD:214549 18/66 (27%)
Int_alpha 275..>316 CDD:214549 13/43 (30%)
Int_alpha 398..451 CDD:214549 21/52 (40%)
Int_alpha 466..>497 CDD:214549 15/30 (50%)
Integrin_alpha2 499..893 CDD:285619 86/415 (21%)
DUF2756 <1120..1178 CDD:298627
itga4XP_002932062.3 Int_alpha 47..98 CDD:214549 17/59 (29%)
Int_alpha 301..347 CDD:214549 20/51 (39%)
Int_alpha 363..415 CDD:214549 21/52 (40%)
Int_alpha 426..>464 CDD:214549 17/37 (46%)
Integrin_alpha2 460..899 CDD:400650 86/415 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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