DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34325 and Pdlim5

DIOPT Version :10

Sequence 1:NP_001097003.1 Gene:CG34325 / 32656 FlyBaseID:FBgn0085354 Length:179 Species:Drosophila melanogaster
Sequence 2:XP_006233474.1 Gene:Pdlim5 / 64353 RGDID:621076 Length:624 Species:Rattus norvegicus


Alignment Length:171 Identity:59/171 - (34%)
Similarity:88/171 - (51%) Gaps:3/171 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ICHKCNEVIQLRIITALGKTWHPEHFVCKDCQCPITEASFNINDGQPVCSACFVSNYSGICHGCK 71
            :|..||:.|:...:.||||:||||.|.|..|:..:....|....|...|..|:...::..|..|:
  Rat   447 MCAHCNQAIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAPECGRCQ 511

  Fly    72 RPILERTIKAMGETWHEECFLCRGPCMQQLAGSSFYEHDGLPYCRTDFEHMFAARCGNCKAPIT- 135
            |.||...|.|:.:|||..||:|.. |.:.:..:.|:..||.|||.||:..:|...|..|:.||. 
  Rat   512 RKILGEVINALKQTWHVSCFVCVA-CGKPIRNNVFHLEDGEPYCETDYYALFGTICRGCEFPIEA 575

  Fly   136 -ENAIVALDAKWHRECFKCKKCKTPITASSFVVEDNQPLCK 175
             :..:.||.:.||..||.|..|...:...:|..:.::||||
  Rat   576 GDMFLEALGSTWHDTCFVCSVCCESLEGQTFFSKKDKPLCK 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34325NP_001097003.1 LIM 8..59 CDD:413332 18/50 (36%)
LIM 67..119 CDD:413332 21/51 (41%)
LIM 127..175 CDD:413332 15/49 (31%)
Pdlim5XP_006233474.1 PDZ_PDLIM-like 5..83 CDD:467235
PLN00049 <36..>142 CDD:177681
PHA03378 <181..447 CDD:223065 59/171 (35%)
DUF4749 214..316 CDD:464948
LIM1_ENH 448..499 CDD:188837 18/50 (36%)
LIM 507..558 CDD:413332 21/51 (41%)
LIM 566..620 CDD:413332 17/51 (33%)
Blue background indicates that the domain is not in the aligned region.

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