DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sep4 and Tmem250

DIOPT Version :9

Sequence 1:NP_573147.2 Gene:Sep4 / 32646 FlyBaseID:FBgn0259923 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_001119767.1 Gene:Tmem250 / 499758 RGDID:1564379 Length:139 Species:Rattus norvegicus


Alignment Length:62 Identity:12/62 - (19%)
Similarity:29/62 - (46%) Gaps:15/62 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 CCLYFVPPWG-----HSLRQMDLDLIRRLHRKVNI-VLVIGKADCLNKQEVRKLKERILQDL 251
            |.|:....||     ..|:.:.:.::.|...|::: :|::|:         |::..|.:.:|
  Rat    62 CSLFTAALWGALAALFCLQYLGVRVLLRFQLKLSVLLLLLGR---------RRVDFRFMNEL 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sep4NP_573147.2 CDC3 65..420 CDD:227352 12/62 (19%)
CDC_Septin 82..357 CDD:206649 12/62 (19%)
Tmem250NP_001119767.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5019
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18884
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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