DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment r and arg4

DIOPT Version :9

Sequence 1:NP_001285343.1 Gene:r / 32640 FlyBaseID:FBgn0003189 Length:2224 Species:Drosophila melanogaster
Sequence 2:NP_596685.1 Gene:arg4 / 2540729 PomBaseID:SPBC215.08c Length:1160 Species:Schizosaccharomyces pombe


Alignment Length:1069 Identity:604/1069 - (56%)
Similarity:767/1069 - (71%) Gaps:40/1069 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   404 RKVLILGSGGLSIGQAGEFDYSGSQAIKAMRESNIQTVLINPNIATVQTSKGMADKCYFLPLTPH 468
            :||:::|||||||||||||||||:|||||:|||::.|:||||||||:|:|..:||:.||||:|..
pombe    87 KKVVVVGSGGLSIGQAGEFDYSGAQAIKALRESSVHTILINPNIATIQSSHSLADEIYFLPVTAE 151

  Fly   469 YVEQVIKSERPNGVLLTFGGQTALNCGVQLERAGVFSKYNVRILGTPIQSIIETEDRKLFAERVN 533
            |:..:|:.|.|:|:|||||||||||.|:||:..|||::.:|::|||||.::..:|||.|||:.:|
pombe   152 YLTHLIERENPDGILLTFGGQTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRDLFAKALN 216

  Fly   534 EIGEQVAPSEAVYSVAQALDAASRLGYPVMARAAFSLGGLGSGFANNEEELQSLAQQALAHSSQL 598
            ||...:|.|.||.:|.:||.||.::.|||:.|:|:||||||||||||:|||||:|.::|:.:.|:
pombe   217 EINIPIAESVAVSTVDEALQAAEKVSYPVIIRSAYSLGGLGSGFANNKEELQSMAAKSLSLTPQI 281

  Fly   599 IVDKSLKGWKEVEYEVVRDAYNNCITVCNMENFDPLGIHTGESIVVAPSQTLSDREYQMLRSTAL 663
            :|:|||||||||||||||||.||||||||||||||||||||:||||||||||||.||.|||:.|:
pombe   282 LVEKSLKGWKEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTAAI 346

  Fly   664 KVIRHFGVVGECNIQYALCPHSEQYYIIEVNARLSRSSALASKATGYPLAYVAAKLALGLPLPDI 728
            |:|||.|||||||:||||.|:|.:|.:||||||||||||||||||||||||.|||:|||..||::
pombe   347 KIIRHLGVVGECNVQYALSPNSLEYRVIEVNARLSRSSALASKATGYPLAYTAAKIALGHTLPEL 411

  Fly   729 KNSVTGNTTACFEPSLDYCVVKIPRWDLAKFVRVSKHIGSSMKSVGEVMAIGRNFEEAFQKALRM 793
            .|:||..|||.|||||||.|.|||||||:||..|::.|||||||||||||:||.|||:.|||||.
pombe   412 PNAVTKTTTANFEPSLDYVVTKIPRWDLSKFQYVNREIGSSMKSVGEVMAVGRTFEESLQKALRQ 476

  Fly   794 VDSDVLGFDPDVVPLNKEQLAEQLSEPTDRRPF-VIAAALQLGMSLRELHQLTNIDYWFLEKLER 857
            ||...|||    :.:..:.|...||.|||||.| |:.|.|..|.|:.::|.||.||.|||.||..
pombe   477 VDPSFLGF----MAMPFKDLDNALSVPTDRRFFAVVEAMLNQGYSIDKIHDLTKIDKWFLSKLAN 537

  Fly   858 IILLQSLLTRNGS--RTDAALLLKAKRFGFSDKQIAKYIKSTELAVRHQRQEFGIRPHVKQIDTV 920
            :..:...|...||  ..:..::|:||:.||||.||:|.:.::||.||.:|:...:.|.||:|||:
pombe   538 MAKVYKELEEIGSLYGLNKEIMLRAKKTGFSDLQISKLVGASELDVRARRKRLDVHPWVKKIDTL 602

  Fly   921 AGEWPASTNYLYHTYNGSEHDVDFPGGHTIVVGSGVYRIGSSVEFDWCAVGCLRELRKLQRPTIM 985
            |.|:||.|||||.:||.|.||:||....|:|:||||||||||||||||.|.|.|.||||...|||
pombe   603 AAEFPAHTNYLYTSYNASSHDIDFNEHGTMVLGSGVYRIGSSVEFDWCGVSCARTLRKLGHSTIM 667

  Fly   986 INYNPETVSTDYDMCDRLYFEEISFEVVMDIYEMENSEGIILSMGGQLPNNIAMDLHRQQAKVLG 1050
            :||||||||||:|.|:||||||:|:|.||||||||.:.||::|:|||||.|||:.|....|||||
pombe   668 VNYNPETVSTDFDECERLYFEELSYERVMDIYEMETASGIVVSVGGQLPQNIALKLQETGAKVLG 732

  Fly  1051 TSPESIDCAENRFKFSRMLDRKGILQPRWKELTNLQSAIEFCEEVGYPCLVRPSYVLSGAAMNVA 1115
            |.|..||.||:|.|||::||:.|:.||.|||||::..|.:|...||||.|||||||||||||:|.
pombe   733 TDPLMIDSAEDRHKFSQILDKIGVDQPAWKELTSVAEASKFANAVGYPVLVRPSYVLSGAAMSVI 797

  Fly  1116 YSNQDLETYLNAASEVSREHPVVISKFLTEAKEIDVDAVASDGRILCMAVSEHVENAGVHSGDAT 1180
            .....|:..|..||.||.:|||||:||:..|:|:|||||||.|::|..|||||||||||||||||
pombe   798 RDESSLKDKLENASAVSPDHPVVITKFIEGARELDVDAVASKGKLLVHAVSEHVENAGVHSGDAT 862

  Fly  1181 LVTPPQDLNAETLEAIKRITCDLASVLDVTGPFNMQLIAKNN-------ELKVIECNVRVSRSFP 1238
            :..||..|:.:.|...|.|...:.....:|||:|||:|...|       :|||||||:|.|||||
pombe   863 IALPPYSLSEDILSRCKEIAEKVCKAFQITGPYNMQIILAQNPDKPDTPDLKVIECNLRASRSFP 927

  Fly  1239 FVSKTLDHDFVATATRAIVGLDVEPLDVLHGVGK--VGVKVPQFSFSRLAGADVQLGVEMASTGE 1301
            ||||||..:|:..|||:|:..:|.....|..|.:  |.|||||||::||||||..|||||:||||
pombe   928 FVSKTLGVNFIDVATRSIIDQEVPAARDLMAVHRDYVCVKVPQFSWTRLAGADPYLGVEMSSTGE 992

  Fly  1302 VACFGDNRYEAYLKAMMST-GFQIPKNAVLLSIGSFKHKMELLPSIRDLAKMGYKLYASMGTGDF 1365
            |||||.:..|||..|:.|| .|:||.....:.:|.  .:.||.....||:|:|||||.:      
pombe   993 VACFGKDVKEAYWAALQSTQNFKIPLPGQGILLGG--DRPELAGIAADLSKLGYKLYVA------ 1049

  Fly  1366 YAEHGVNVESVQWTFDKTTPDDIN---GELRHLAEFLANKQFDLVINLPMSGGGARRVSSFMTHG 1427
                  |.::.: ....|:.:.:.   .:.|.|...........|.||..:.|     .:.:...
pombe  1050 ------NKDAAK-LLQPTSAEVVEFPVKDKRALRAIFEKYNIRSVFNLASARG-----KNVLDQD 1102

  Fly  1428 YRTRRLAVDYSIPLVTDVKCTKLLVESMR 1456
            |..||.|||:::.|:.||.|.||.|||::
pombe  1103 YVMRRNAVDFNVTLINDVNCAKLFVESLK 1131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rNP_001285343.1 CPSaseIIsmall 7..376 CDD:273580
CPSase_sm_chain 7..151 CDD:279346
GATase1_CPSase 196..371 CDD:153215
CPSaseII_lrg 403..1455 CDD:273581 603/1066 (57%)
CPSase_L_D2 524..726 CDD:280881 146/201 (73%)
CPSase_L_D3 815..935 CDD:280882 56/122 (46%)
P-loop_NTPase 947..>1149 CDD:304359 127/201 (63%)
ATP-grasp_4 1084..1265 CDD:302634 100/187 (53%)
MGS_CPS_I_III 1327..1453 CDD:238711 31/128 (24%)
CAD_DHOase 1475..1821 CDD:238641
PLN02527 1918..2220 CDD:178142
OTCace_N 1919..2060 CDD:280825
OTCace 2067..2216 CDD:278609
arg4NP_596685.1 CPSaseII_lrg 93..1130 CDD:273581 601/1060 (57%)
CPSase_L_D2 207..409 CDD:280881 146/201 (73%)
CPSase_L_D3 494..617 CDD:280882 56/122 (46%)
ATP-grasp_4 743..943 CDD:302634 110/199 (55%)
MGS_CPS_I_III 1021..1128 CDD:238711 31/126 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 299 1.000 Domainoid score I263
eggNOG 1 0.900 - - E1_COG0458
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55291
OrthoFinder 1 1.000 - - FOG0001016
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100435
Panther 1 1.100 - - O PTHR11405
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1046
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.850

Return to query results.
Submit another query.