DRSC/TRiP Functional Genomics Resources

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Protein Alignment mthl1 and Remo

DIOPT Version :10

Sequence 1:NP_573140.1 Gene:mthl1 / 32637 FlyBaseID:FBgn0030766 Length:676 Species:Drosophila melanogaster
Sequence 2:NP_572870.2 Gene:Remo / 2768909 FlyBaseID:FBgn0030466 Length:1797 Species:Drosophila melanogaster


Alignment Length:461 Identity:92/461 - (19%)
Similarity:152/461 - (32%) Gaps:149/461 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 GTLYVRERALMVQPSDYCVDWEVAVVCL--------------NDSQPINALEDPDYA-------- 179
            |:| .::|.|.|:..:..:|..|::.|:              ||:.|:....|.|.|        
  Fly   547 GSL-AQQRNLFVEFFNISLDAFVSLSCVWLEQSPRGFQCNSANDTIPMYEHGDIDAAIQLPYSVI 610

  Fly   180 --ANPLVQQEPPKASLRLSKCC---GKW-----GSYNTQLQNC--------------------DL 214
              ::..:.......||||....   ||.     ||:|..|.:.                    :|
  Fly   611 GNSSTTLPATTTIRSLRLMISLHRNGKLLPNLRGSHNESLSSAIIGILAYSSDGEALQFRADNEL 675

  Fly   215 QPN---HQAAVDGLLRLSPQLPEGSYQTSYGLPDCGQPGGYSIAGDWQDAKLDR-NTAMLQ--LP 273
            .|.   :|..|..:||..|      |......|   ||.       |.||...| .|::.|  ..
  Fly   676 DPEEDVYQQRVTVMLRAHP------YHNPLSAP---QPA-------WWDADEQRWETSVCQQHYQ 724

  Fly   274 HKNL------SAGQY-CLEHTQREGEVKIIACQHLFSSAAGAGIHDGSIGGTIEQANGQNLQKAV 331
            |:.|      ..|.| .|:.:|...:.:        |..:||..              ::...||
  Fly   725 HRTLVMFSCSRTGYYGLLQRSQYLNDFR--------SEESGARF--------------RHPPAAV 767

  Fly   332 LTG-GILVSIVFLSATLVAGF-----LLPAVHHALHWRCQICYVTCLLFGKILLA----IEELSS 386
            ..| |:|.:....:|...|.|     :.....|||       ..|.|..|.:.||    |.:.:|
  Fly   768 YAGCGLLFACCAFNAVTFAVFGRAVRINRVQRHAL-------VNTWLALGALALAFSLGIYQTAS 825

  Fly   387 SLQPGSAACHTLAITMQFFFLAAFFWLNTMCFNIWWTFRDFRPSS-----------LERNQEALR 440
            ..|     |..|.:.|.:..|....|   :|.::...::....::           :|..:|..|
  Fly   826 QPQ-----CRLLGLLMHYLGLCVLLW---VCVSLSSMYKRLTKTTTSGQGQCPGQDMEPQRERER 882

  Fly   441 RYLYSLY--AWGGPLLITFVAACVDQLPETTLLRPGFGQLYCWFDNRNLSIFAYFYGPIGLLLCA 503
            :.:..:|  .||..|||..:::.|:.....|       ..||:..:............|.::.|.
  Fly   883 KPILGIYLVGWGIALLICGISSAVNLAEYAT-------YDYCFLHSSTTLNALLVPAVILVIFCG 940

  Fly   504 NIALFV 509
            .:||.:
  Fly   941 ILALCI 946

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mthl1NP_573140.1 7tmB3_Methuselah-like 326..598 CDD:410632 42/207 (20%)
TM helix 1 327..352 CDD:410632 8/30 (27%)
TM helix 2 362..384 CDD:410632 6/25 (24%)
TM helix 3 396..423 CDD:410632 5/26 (19%)
TM helix 4 441..461 CDD:410632 6/21 (29%)
TM helix 5 485..515 CDD:410632 4/25 (16%)
TM helix 6 530..557 CDD:410632
TM helix 7 562..587 CDD:410632
RemoNP_572870.2 PPP1R42 <56..148 CDD:455733
LRR_8 107..168 CDD:404697
leucine-rich repeat 109..133 CDD:275378
leucine-rich repeat 134..157 CDD:275378
PCC 139..>205 CDD:188093
HRM <366..412 CDD:413313
7tm_GPCRs 760..1101 CDD:475119 42/223 (19%)
TM helix 1 763..787 CDD:320387 6/23 (26%)
TM helix 2 799..820 CDD:320387 8/27 (30%)
TM helix 3 830..852 CDD:320387 5/24 (21%)
TM helix 4 887..903 CDD:320387 6/15 (40%)
TM helix 5 921..944 CDD:320387 2/22 (9%)
TM helix 6 1039..1061 CDD:320387
TM helix 7 1065..1090 CDD:320387
Blue background indicates that the domain is not in the aligned region.

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