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Protein Alignment SNRPG and LSM1A
DIOPT Version :10
| Sequence 1: | NP_573139.1 |
Gene: | SNRPG / 32636 |
FlyBaseID: | FBgn0261791 |
Length: | 76 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_564072.1 |
Gene: | LSM1A / 838495 |
AraportID: | AT1G19120 |
Length: | 128 |
Species: | Arabidopsis thaliana |
| Alignment Length: | 87 |
Identity: | 28/87 - (32%) |
| Similarity: | 46/87 - (52%) |
Gaps: | 17/87 - (19%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 1 MSKAHPPEV------KKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEE-------CKDN 52
||.|.|.:: ..|:||::::.|..||.:.|:||.||.|.|.||::..|. |
plant 1 MSWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYC--- 62
Fly 53 TKNNIGMVVIRGNSIVMVEALD 74
...:|:.:|||.::|::..||
plant 63 -DIPLGLYIIRGENVVLIGELD 83
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| SNRPG | NP_573139.1 |
Sm_G |
5..74 |
CDD:212466 |
23/81 (28%) |
| LSM1A | NP_564072.1 |
LSm1 |
9..82 |
CDD:212475 |
22/76 (29%) |
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