DRSC/TRiP Functional Genomics Resources

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Protein Alignment SNRPG and AT3G11500

DIOPT Version :9

Sequence 1:NP_001138209.1 Gene:SNRPG / 32636 FlyBaseID:FBgn0261791 Length:76 Species:Drosophila melanogaster
Sequence 2:NP_001319523.1 Gene:AT3G11500 / 820323 AraportID:AT3G11500 Length:79 Species:Arabidopsis thaliana


Alignment Length:77 Identity:48/77 - (62%)
Similarity:61/77 - (79%) Gaps:2/77 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSKA-HPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRG 64
            ||:: .||::||||||::.:|||..|.|.|.|||||.|||:|:|:|||...|: |.:||||||||
plant     1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDD-KTDIGMVVIRG 64

  Fly    65 NSIVMVEALDRV 76
            ||||.||||:.|
plant    65 NSIVTVEALEPV 76

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNRPGNP_001138209.1 Sm_G 5..74 CDD:212466 44/68 (65%)
AT3G11500NP_001319523.1 Sm_G 6..74 CDD:212466 44/68 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 83 1.000 Domainoid score I2889
eggNOG 1 0.900 - - E1_KOG1780
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 94 1.000 Inparanoid score I2237
OMA 1 1.010 - - QHG53808
OrthoDB 1 1.010 - - D1593201at2759
OrthoFinder 1 1.000 - - FOG0003135
OrthoInspector 1 1.000 - - otm3029
orthoMCL 1 0.900 - - OOG6_102408
Panther 1 1.100 - - LDO PTHR10553
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2104
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

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