DRSC/TRiP Functional Genomics Resources

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Protein Alignment SNRPG and SmF

DIOPT Version :10

Sequence 1:NP_573139.1 Gene:SNRPG / 32636 FlyBaseID:FBgn0261791 Length:76 Species:Drosophila melanogaster
Sequence 2:NP_523708.2 Gene:SmF / 36314 FlyBaseID:FBgn0000426 Length:88 Species:Drosophila melanogaster


Alignment Length:78 Identity:22/78 - (28%)
Similarity:43/78 - (55%) Gaps:4/78 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSKAHPPEVKKYMD----KRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVV 61
            ||...|...|.:::    |.:::||..|:...|.|...|.:||:.|.:|.|..:.:...|:|.|:
  Fly     1 MSAGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVL 65

  Fly    62 IRGNSIVMVEALD 74
            ||.|:::.::.::
  Fly    66 IRCNNVLYIKGME 78

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNRPGNP_573139.1 Sm_G 5..74 CDD:212466 20/72 (28%)
SmFNP_523708.2 Sm_F 8..76 CDD:212469 19/67 (28%)

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