DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup153 and NUP1

DIOPT Version :9

Sequence 1:NP_001097002.1 Gene:Nup153 / 32630 FlyBaseID:FBgn0061200 Length:1929 Species:Drosophila melanogaster
Sequence 2:NP_014741.1 Gene:NUP1 / 854265 SGDID:S000005624 Length:1076 Species:Saccharomyces cerevisiae


Alignment Length:1387 Identity:306/1387 - (22%)
Similarity:463/1387 - (33%) Gaps:450/1387 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   603 LSNTTMRILNLLESYSTPLIDAKRMGSSIKEHQSSRQQRQGTPATPYLRSTSASRNVSVPNHINE 667
            :|:.|..::      |:|.::.:...|::|...::..:::.:....:      |.|:|..||:.|
Yeast     1 MSSNTSSVM------SSPRVEKRSFSSTLKSFFTNPNKKRPSSKKVF------SSNLSYANHLEE 53

  Fly   668 L---AELRSNKLLVPTMQQLLERRRLHRVTQNSRDVVHSQN---VRAGGENNQEKPKPTAPYVAP 726
            .   ..|..||           |:|:...:|:|..:..:.|   :...|..|.|:| |..| :.|
Yeast    54 SDVEDTLHVNK-----------RKRVSGTSQHSDSLTQNNNNAPIIIYGTENTERP-PLLP-ILP 105

  Fly   727 IDQSANHTQHTNKMRSRLSHQTRNKETRTAEEEAPPPLDLPQ-ISFPDMASA------PKFD--- 781
            |            .|.||..:  .:..|...|     |.|.| ..||.:.|:      .|.|   
Yeast   106 I------------QRLRLLRE--KQRVRNMRE-----LGLIQSTEFPSITSSVILGSQSKSDEGG 151

  Fly   782 --LIIKPTVPVVSKPSTTDPIQSSKSSNTNL------STTNSKQMPNFLANPQPAAPIVNFA--- 835
              |....|...:...|.|..:......:||:      |..|......|.:..:......||.   
Yeast   152 SYLCTSSTPSPIKNGSCTRQLAGKSGEDTNVGLPILKSLKNRSNRKRFHSQSKGTVWSANFEYDL 216

  Fly   836 -------------ANGNVSAISKPSKRTFTFSEPTPLSNFQENCIPKPKINRKYTFSAPAPLDDL 887
                         ..||.....|.|:......  :.:||  .|....|.:.        :.::||
Yeast   217 SEYDAIQKKDNKDKEGNAGGDQKTSENRNNIK--SSISN--GNLATGPNLT--------SEIEDL 269

  Fly   888 RI---TNKQSQPTINGTPSSKEWECDTCMVRNKPEINKCVACETAKPVASAAPVQAPLPPSTAAI 949
            |.   :|:.|.|..|             ::...|          |..||..||:|          
Yeast   270 RADINSNRLSNPQKN-------------LLLKGP----------ASTVAKTAPIQ---------- 301

  Fly   950 DTQSFVGFGDRFKKSTTAWECDACMLSNKAEASKCIACETPRKTVAPKVNNFSPLITNA-----K 1009
              :|||...:|   |.|                     .|.:|.:.||.:..|.::...     |
Yeast   302 --ESFVPNSER---SGT---------------------PTLKKNIEPKKDKESIVLPTVGFDFIK 340

  Fly  1010 SNEWECSVCLVRNKVEVSKCVACESAKPGATMALPATSNIAVATPSIITDGFGDRFKKSATAWEC 1074
            .||                       .|....:..|||:......|.:..|..|:..|:|.|   
Yeast   341 DNE-----------------------TPSKKTSPKATSSAGAVFKSSVEMGKTDKSTKTAEA--- 379

  Fly  1075 DACMLSNKAEASKCIACETPRKSSTPIANSSYPSINNNLPAGSGFDISFTRKANMWECQTCLVMN 1139
                                            |:::.|          |::|||         ..
Yeast   380 --------------------------------PTLSFN----------FSQKAN---------KT 393

  Fly  1140 KSSDEECIACQTPNSQARNSNSESALISSISSSSASFSGSLSRPSSRSSSGSTSTCGSVCSGSIV 1204
            |:.|.     ..|::...|...:|   .:::|:|..|  ...:.|.:|.:.:.|......:..|.
Yeast   394 KAVDN-----TVPSTTLFNFGGKS---DTVTSASQPF--KFGKTSEKSENHTESDAPPKSTAPIF 448

  Fly  1205 SISSTTESA-------KALSAKKVPPKPDAGFQQLVAAQKTSTW-ECEACLAKNDMSRKTCICCE 1261
            |.....|:.       :....:::|...|...:.|....||... |.:...::.|.|.|      
Yeast   449 SFGKQEENGDEGDDENEPKRKRRLPVSEDTNTKPLFDFGKTGDQKETKKGESEKDASGK------ 507

  Fly  1262 QMMPEAFNPAAT--TANSAASSVPKFRFGFSHVKEVVKPSVETTTTPAPTSAQFSFGFGQSNQGK 1324
                    |:..  .::..|...|.|.||       .|..|   |:...:||||:  ||::...|
Yeast   508 --------PSFVFGASDKQAEGTPLFTFG-------KKADV---TSNIDSSAQFT--FGKAATAK 552

  Fly  1325 DVADSKKTEAP------KTFMFGVSKVEEPKTVSFGTGIKETTATSSTEATAPTPAAAAPAPVQF 1383
            : ..:|.:|.|      .||.||.|..|  ..:|.|:.....:.:.|.|....:|.:...|...|
Yeast   553 E-THTKPSETPATIVKKPTFTFGQSTSE--NKISEGSAKPTFSFSKSEEERKSSPISNEAAKPSF 614

  Fly  1384 VFKAPTTATTASSLTTTISTTSNAPALGGFSFGAPS--SSSTVSS----STTSTSANPAAVKPMF 1442
            .|........|.:...|:..|        |||..|:  .||.||.    |.|..|:..:..||:|
Yeast   615 SFPGKPVDVQAPTDDKTLKPT--------FSFTEPAQKDSSVVSEPKKPSFTFASSKTSQPKPLF 671

  Fly  1443 SWS---------GAGSAVSSTSSSQQPVAKAPT---LGFGVSSSTVTTTTTSTK-VFAFTPASGL 1494
            |:.         |:.::.|.|........|.||   ..|| .|:|..||||||| .|:|.....:
Yeast   672 SFGKSDAAKEPPGSNTSFSFTKPPANETDKRPTPPSFTFG-GSTTNNTTTTSTKPSFSFGAPESM 735

  Fly  1495 DPAAATSA---PAAGAGFSFGSQSKPATTQNTGTFFFGQPTAVAPATPTNPSVSSIFGAPATSTT 1556
            ...|:|:|   .....||||...:......|:.|.||   ...|.:||.     .:.|.|..:|.
Yeast   736 KSTASTAAANTEKLSNGFSFTKFNHNKEKSNSPTSFF---DGSASSTPI-----PVLGKPTDATG 792

  Fly  1557 ASTSVSA----TTSTSTANAIASSFAPTSTPQLFGNWGEKKTDLTTFGASSGSGTTTTPSFGWSS 1617
            .:||.||    |.:|:..||.|:|                 |..:....::|:|||||       
Yeast   793 NTTSKSAFSFGTANTNGTNASANS-----------------TSFSFNAPATGNGTTTT------- 833

  Fly  1618 NGDAAKSNSAAVGSAAVPSSSASTMATPIFGSSSMFGPSSSSNNTTSTSTTSLPFGSAATTAATT 1682
             .:.:.:|.|...:...|..|.::..|.  |:.|.||.|||              |:|||.||:.
Yeast   834 -SNTSGTNIAGTFNVGKPDQSIASGNTN--GAGSAFGFSSS--------------GTAATGAASN 881

  Fly  1683 PAGGNAALTGLFGNVGNSLAGVGAPVATTPAATAAAPLTNIFGNPTPVAAAAPVFGSGSTIPSAG 1747
            .:..|      |||  |...|:....:.|.:..|.|   .:|..| |...|..|           
Yeast   882 QSSFN------FGN--NGAGGLNPFTSATSSTNANA---GLFNKP-PSTNAQNV----------- 923

  Fly  1748 FGAPAAAAPLAAPALPGAFNFGGATAATPAASS---------APFVFGSSTNEP--LAKPSFNFT 1801
                         .:|.||||.| ..:||...|         |..||..|.|:|  ...||||..
Yeast   924 -------------NVPSAFNFTG-NNSTPGGGSVFNMNGNTNANTVFAGSNNQPHQSQTPSFNTN 974

  Fly  1802 GSAASSTAPAPAFNFTANTAATNNPSGGDSHPRIFQFGSSQPAANNQ--------FGGAGGATNN 1858
            .|...||  .|..||:.......|.:.....|... ||::..:.:|.        ||||||....
Yeast   975 SSFTPST--VPNINFSGLNGGITNTATNALRPSDI-FGANAASGSNSNVTNPSSIFGGAGGVPTT 1036

  Fly  1859 SAGGMPMFNFSPGAPQMQSTPN 1880
            |.|            |.||.||
Yeast  1037 SFG------------QPQSAPN 1046

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup153NP_001097002.1 Nup153 <458..910 CDD:285770 67/349 (19%)
RanBP2-type Zn finger 864..883 CDD:275375 2/18 (11%)
zf-RanBP 903..931 CDD:279035 2/27 (7%)
RanBP2-type Zn finger 907..926 CDD:275375 1/18 (6%)
zf-RanBP 968..992 CDD:279035 1/23 (4%)
RanBP2-type Zn finger 968..987 CDD:275375 0/18 (0%)
zf-RanBP 1009..1038 CDD:279035 3/28 (11%)
RanBP2-type Zn finger 1013..1032 CDD:275375 0/18 (0%)
zf-RanBP 1072..1097 CDD:279035 0/24 (0%)
RanBP2-type Zn finger 1072..1091 CDD:275375 0/18 (0%)
zf-RanBP 1126..1155 CDD:279035 6/28 (21%)
RanBP2-type Zn finger 1130..1149 CDD:275375 2/18 (11%)
ZnF_RBZ 1239..1261 CDD:197784 4/22 (18%)
RanBP2-type Zn finger 1241..1260 CDD:275375 4/19 (21%)
NUP1NP_014741.1 PTZ00482 302..>490 CDD:240433 48/298 (16%)
PTZ00108 <458..690 CDD:240271 61/268 (23%)
COG5651 <737..1053 CDD:227938 109/411 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23193
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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