DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup153 and NUP1

DIOPT Version :10

Sequence 1:NP_001097002.1 Gene:Nup153 / 32630 FlyBaseID:FBgn0061200 Length:1929 Species:Drosophila melanogaster
Sequence 2:NP_014741.1 Gene:NUP1 / 854265 SGDID:S000005624 Length:1076 Species:Saccharomyces cerevisiae


Alignment Length:1387 Identity:306/1387 - (22%)
Similarity:463/1387 - (33%) Gaps:450/1387 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   603 LSNTTMRILNLLESYSTPLIDAKRMGSSIKEHQSSRQQRQGTPATPYLRSTSASRNVSVPNHINE 667
            :|:.|..::      |:|.::.:...|::|...::..:::.:....:      |.|:|..||:.|
Yeast     1 MSSNTSSVM------SSPRVEKRSFSSTLKSFFTNPNKKRPSSKKVF------SSNLSYANHLEE 53

  Fly   668 L---AELRSNKLLVPTMQQLLERRRLHRVTQNSRDVVHSQN---VRAGGENNQEKPKPTAPYVAP 726
            .   ..|..||           |:|:...:|:|..:..:.|   :...|..|.|:| |..| :.|
Yeast    54 SDVEDTLHVNK-----------RKRVSGTSQHSDSLTQNNNNAPIIIYGTENTERP-PLLP-ILP 105

  Fly   727 IDQSANHTQHTNKMRSRLSHQTRNKETRTAEEEAPPPLDLPQ-ISFPDMASA------PKFD--- 781
            |            .|.||..:  .:..|...|     |.|.| ..||.:.|:      .|.|   
Yeast   106 I------------QRLRLLRE--KQRVRNMRE-----LGLIQSTEFPSITSSVILGSQSKSDEGG 151

  Fly   782 --LIIKPTVPVVSKPSTTDPIQSSKSSNTNL------STTNSKQMPNFLANPQPAAPIVNFA--- 835
              |....|...:...|.|..:......:||:      |..|......|.:..:......||.   
Yeast   152 SYLCTSSTPSPIKNGSCTRQLAGKSGEDTNVGLPILKSLKNRSNRKRFHSQSKGTVWSANFEYDL 216

  Fly   836 -------------ANGNVSAISKPSKRTFTFSEPTPLSNFQENCIPKPKINRKYTFSAPAPLDDL 887
                         ..||.....|.|:......  :.:||  .|....|.:.        :.::||
Yeast   217 SEYDAIQKKDNKDKEGNAGGDQKTSENRNNIK--SSISN--GNLATGPNLT--------SEIEDL 269

  Fly   888 RI---TNKQSQPTINGTPSSKEWECDTCMVRNKPEINKCVACETAKPVASAAPVQAPLPPSTAAI 949
            |.   :|:.|.|..|             ::...|          |..||..||:|          
Yeast   270 RADINSNRLSNPQKN-------------LLLKGP----------ASTVAKTAPIQ---------- 301

  Fly   950 DTQSFVGFGDRFKKSTTAWECDACMLSNKAEASKCIACETPRKTVAPKVNNFSPLITNA-----K 1009
              :|||...:|   |.|                     .|.:|.:.||.:..|.::...     |
Yeast   302 --ESFVPNSER---SGT---------------------PTLKKNIEPKKDKESIVLPTVGFDFIK 340

  Fly  1010 SNEWECSVCLVRNKVEVSKCVACESAKPGATMALPATSNIAVATPSIITDGFGDRFKKSATAWEC 1074
            .||                       .|....:..|||:......|.:..|..|:..|:|.|   
Yeast   341 DNE-----------------------TPSKKTSPKATSSAGAVFKSSVEMGKTDKSTKTAEA--- 379

  Fly  1075 DACMLSNKAEASKCIACETPRKSSTPIANSSYPSINNNLPAGSGFDISFTRKANMWECQTCLVMN 1139
                                            |:::.|          |::|||         ..
Yeast   380 --------------------------------PTLSFN----------FSQKAN---------KT 393

  Fly  1140 KSSDEECIACQTPNSQARNSNSESALISSISSSSASFSGSLSRPSSRSSSGSTSTCGSVCSGSIV 1204
            |:.|.     ..|::...|...:|   .:::|:|..|  ...:.|.:|.:.:.|......:..|.
Yeast   394 KAVDN-----TVPSTTLFNFGGKS---DTVTSASQPF--KFGKTSEKSENHTESDAPPKSTAPIF 448

  Fly  1205 SISSTTESA-------KALSAKKVPPKPDAGFQQLVAAQKTSTW-ECEACLAKNDMSRKTCICCE 1261
            |.....|:.       :....:::|...|...:.|....||... |.:...::.|.|.|      
Yeast   449 SFGKQEENGDEGDDENEPKRKRRLPVSEDTNTKPLFDFGKTGDQKETKKGESEKDASGK------ 507

  Fly  1262 QMMPEAFNPAAT--TANSAASSVPKFRFGFSHVKEVVKPSVETTTTPAPTSAQFSFGFGQSNQGK 1324
                    |:..  .::..|...|.|.||       .|..|   |:...:||||:  ||::...|
Yeast   508 --------PSFVFGASDKQAEGTPLFTFG-------KKADV---TSNIDSSAQFT--FGKAATAK 552

  Fly  1325 DVADSKKTEAP------KTFMFGVSKVEEPKTVSFGTGIKETTATSSTEATAPTPAAAAPAPVQF 1383
            : ..:|.:|.|      .||.||.|..|  ..:|.|:.....:.:.|.|....:|.:...|...|
Yeast   553 E-THTKPSETPATIVKKPTFTFGQSTSE--NKISEGSAKPTFSFSKSEEERKSSPISNEAAKPSF 614

  Fly  1384 VFKAPTTATTASSLTTTISTTSNAPALGGFSFGAPS--SSSTVSS----STTSTSANPAAVKPMF 1442
            .|........|.:...|:..|        |||..|:  .||.||.    |.|..|:..:..||:|
Yeast   615 SFPGKPVDVQAPTDDKTLKPT--------FSFTEPAQKDSSVVSEPKKPSFTFASSKTSQPKPLF 671

  Fly  1443 SWS---------GAGSAVSSTSSSQQPVAKAPT---LGFGVSSSTVTTTTTSTK-VFAFTPASGL 1494
            |:.         |:.::.|.|........|.||   ..|| .|:|..||||||| .|:|.....:
Yeast   672 SFGKSDAAKEPPGSNTSFSFTKPPANETDKRPTPPSFTFG-GSTTNNTTTTSTKPSFSFGAPESM 735

  Fly  1495 DPAAATSA---PAAGAGFSFGSQSKPATTQNTGTFFFGQPTAVAPATPTNPSVSSIFGAPATSTT 1556
            ...|:|:|   .....||||...:......|:.|.||   ...|.:||.     .:.|.|..:|.
Yeast   736 KSTASTAAANTEKLSNGFSFTKFNHNKEKSNSPTSFF---DGSASSTPI-----PVLGKPTDATG 792

  Fly  1557 ASTSVSA----TTSTSTANAIASSFAPTSTPQLFGNWGEKKTDLTTFGASSGSGTTTTPSFGWSS 1617
            .:||.||    |.:|:..||.|:|                 |..:....::|:|||||       
Yeast   793 NTTSKSAFSFGTANTNGTNASANS-----------------TSFSFNAPATGNGTTTT------- 833

  Fly  1618 NGDAAKSNSAAVGSAAVPSSSASTMATPIFGSSSMFGPSSSSNNTTSTSTTSLPFGSAATTAATT 1682
             .:.:.:|.|...:...|..|.::..|.  |:.|.||.|||              |:|||.||:.
Yeast   834 -SNTSGTNIAGTFNVGKPDQSIASGNTN--GAGSAFGFSSS--------------GTAATGAASN 881

  Fly  1683 PAGGNAALTGLFGNVGNSLAGVGAPVATTPAATAAAPLTNIFGNPTPVAAAAPVFGSGSTIPSAG 1747
            .:..|      |||  |...|:....:.|.:..|.|   .:|..| |...|..|           
Yeast   882 QSSFN------FGN--NGAGGLNPFTSATSSTNANA---GLFNKP-PSTNAQNV----------- 923

  Fly  1748 FGAPAAAAPLAAPALPGAFNFGGATAATPAASS---------APFVFGSSTNEP--LAKPSFNFT 1801
                         .:|.||||.| ..:||...|         |..||..|.|:|  ...||||..
Yeast   924 -------------NVPSAFNFTG-NNSTPGGGSVFNMNGNTNANTVFAGSNNQPHQSQTPSFNTN 974

  Fly  1802 GSAASSTAPAPAFNFTANTAATNNPSGGDSHPRIFQFGSSQPAANNQ--------FGGAGGATNN 1858
            .|...||  .|..||:.......|.:.....|... ||::..:.:|.        ||||||....
Yeast   975 SSFTPST--VPNINFSGLNGGITNTATNALRPSDI-FGANAASGSNSNVTNPSSIFGGAGGVPTT 1036

  Fly  1859 SAGGMPMFNFSPGAPQMQSTPN 1880
            |.|            |.||.||
Yeast  1037 SFG------------QPQSAPN 1046

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup153NP_001097002.1 RanBP2-type Zn finger 864..883 CDD:275375 2/18 (11%)
zf-RanBP 903..931 CDD:395516 2/27 (7%)
RanBP2-type Zn finger 907..926 CDD:275375 1/18 (6%)
zf-RanBP 968..992 CDD:395516 1/23 (4%)
RanBP2-type Zn finger 968..987 CDD:275375 0/18 (0%)
zf-RanBP 1009..1038 CDD:395516 3/28 (11%)
RanBP2-type Zn finger 1013..1032 CDD:275375 0/18 (0%)
zf-RanBP 1072..1097 CDD:395516 0/24 (0%)
RanBP2-type Zn finger 1072..1091 CDD:275375 0/18 (0%)
zf-RanBP 1126..1155 CDD:395516 6/28 (21%)
RanBP2-type Zn finger 1130..1149 CDD:275375 2/18 (11%)
ZnF_RBZ 1239..1261 CDD:197784 4/22 (18%)
RanBP2-type Zn finger 1241..1260 CDD:275375 4/19 (21%)
NUP1NP_014741.1 PTZ00482 302..>490 CDD:240433 48/298 (16%)
PTZ00108 <458..690 CDD:240271 61/268 (23%)
Nucleoporin_FG2 853..>1064 CDD:435043 72/262 (27%)

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