DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup153 and nup124

DIOPT Version :9

Sequence 1:NP_001097002.1 Gene:Nup153 / 32630 FlyBaseID:FBgn0061200 Length:1929 Species:Drosophila melanogaster
Sequence 2:NP_593213.1 Gene:nup124 / 2542254 PomBaseID:SPAC30D11.04c Length:1159 Species:Schizosaccharomyces pombe


Alignment Length:1589 Identity:347/1589 - (21%)
Similarity:506/1589 - (31%) Gaps:609/1589 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   480 RRRFNASIYGSTSALSDSRLLSGSAS---NSGSASASS------SPFYQGRT------------- 522
            :|.|::.::..||.|.:.  .||:||   .||.|...|      :|.|.|::             
pombe    34 KRAFSSVLHPFTSGLDEK--ASGTASKDRKSGRAGTKSLLTPELTPHYLGKSPRIIRVSNRSHVR 96

  Fly   523 TFGG-------NSGNNR-------------LFSR------SNLSSSAASSMLGLNSAGSSPAHQL 561
            |..|       |:...|             ||.|      .:|:|...||.|. ...||:..||:
pombe    97 TIDGIEEKVHTNTFEPRKPKQKQDYTNSPTLFKRHDELSLKSLNSLHPSSALS-KKLGSTSQHQI 160

  Fly   562 HASMTGGIGYGMKAVDMRPSDSGSLAETSVGQGGSKKPGTGLSNTTMRILNLLESYST------- 619
                            ..|..|.||..........:|....:|:....  .:.|:..|       
pombe   161 ----------------ATPKSSASLLNILRSLHDEQKNTLNISSVKQD--RITEANPTCEKRKPS 207

  Fly   620 ----PLIDAKRMGSSIKEHQSSRQQRQGTPATPYLRSTSASRN-------VSVPNHI--NELAEL 671
                |::..|:..:...|::.|.:|.:........:|.:..|:       ||..||:  ......
pombe   208 RSPSPMLSKKKSVARASENEPSAKQNKSFSGNDSHKSLTDIRDKENGETEVSAKNHVPHRSSRRR 272

  Fly   672 RSNKLLVPTMQQLLERRRLHRVTQNSRDVVHSQNVRAGGENNQEKPKPTAPYVAPIDQSANHTQH 736
            |.::.|:|.:.:.||:..|.:....:.:|....|  .|.....:|            |...|...
pombe   273 RRHQRLIPIIYETLEQMDLRKPVLVNAEVQTDSN--PGNTMFIDK------------QDIYHRLS 323

  Fly   737 TNKMRSRLSHQTRNKETRTAEEEAPPPLDLPQI----------SFPDMASAPKFDLIIKPTVPVV 791
            |...|.|.:.:..:.:..:|.:|     ||.:|          :.|  ...||.:.|:       
pombe   324 TPTSRKRQTLEKGHIKAFSAVDE-----DLDEIFACEDDVHYTALP--KQNPKSERIL------- 374

  Fly   792 SKPSTTDPIQSSKSSNTNLSTTNSKQMPNFLANPQPAAPIVNFAANGNVSAISKPSKRTFTFSEP 856
                  :||.:|...||:                                     .|...|.|.|
pombe   375 ------EPIIASPKDNTS-------------------------------------DKGLLTKSAP 396

  Fly   857 TPLSNFQENCIPKPKINRKYTFSAPAPLDD-LRITNKQSQPTINGTPSSKEWECDTCMVRNKPEI 920
            | ....|.:..|||        ...:|.|. |.:.|.:...|....|.||:.|.......:.|  
pombe   397 T-FEELQASITPKP--------VKTSPNDTALTLANAEDNKTFEHQPLSKDTEAPKSQFSSSP-- 450

  Fly   921 NKCVACETAKPVASAAPVQAPLPPSTAAIDTQSFVGFGDRFKKSTTAWECDACMLSNKAEASKCI 985
                   |.:.....:.|:.|.|  :..|.:..|.....:|:..|.|                  
pombe   451 -------TKESTTRKSEVEPPSP--SKEIKSSHFSVPEFKFEPKTEA------------------ 488

  Fly   986 ACETPRKTVAPKVNNFSPLIT------NAKSNEWECSVCLVRNKVEVSKCVACESAKPGATMALP 1044
              .|.:|...||. .|.|..|      ..|.||                      .||.....||
pombe   489 --TTDKKLNVPKF-EFKPTATADVQTNRLKENE----------------------PKPTFFAQLP 528

  Fly  1045 ATSNIAVATPSIITDGFGDRFKKSATAWECDACMLSNKAEASKCIACETPRKSSTPIANSSYPSI 1109
            :.:.   .||| ||:.....|.:           ||.|.|       ||.:|.:.|.|.:|    
pombe   529 SKTQ---ETPS-ITENKPSFFSQ-----------LSPKRE-------ETEKKDNAPSAPAS---- 567

  Fly  1110 NNNLPAGSGFDISFTRKANMWECQTC------LVMNKSSDEECIACQT-----------PNSQAR 1157
                  .|||.........:.|.:..      ..:|.:|..:.....|           |.|...
pombe   568 ------TSGFSFGGFAPKTLEEKEETKAPTFNFSLNNASSTQDTTKPTLQFNFGSSFGKPTSNIF 626

  Fly  1158 NSNSESALISSISSSSASFSGSLSRPSSRSSSGSTSTCGSVCSGSIVSISSTTESAKALSAKKVP 1222
            |....|.  :.::||:.:.....|.|.|:.|||..:|.||    |..|.:.|.||      |:||
pombe   627 NDKKTSE--NGLASSTVASESKPSAPESKPSSGFGNTAGS----SPFSFNLTKES------KEVP 679

  Fly  1223 PKPDAGFQQLVAAQKTSTWECEACLAKNDMSRKTCICCEQMMPEAFNPAATTANSAASSVPKFRF 1287
            |.....|     |:|          .|::                    |..:.||.:|.|   |
pombe   680 PTNSFSF-----AKK----------GKDE--------------------ANDSLSAKASTP---F 706

  Fly  1288 GFSHVKEVVKPSVETTTTPAPTSAQFSFGFGQSNQGKDVADSKKTEAP-KTFMFGVSKVEEPKTV 1351
            .|:      ||:.|..||.||   ||||.|.:.|     .|:|....| |||.            
pombe   707 SFA------KPNTENVTTTAP---QFSFNFTKPN-----TDAKTNLLPEKTFN------------ 745

  Fly  1352 SFGTGIKETTATSSTEATAPTPAAAAPAPVQFVFKAPTTATTASSLTTTISTTSNAPALGGFSFG 1416
                  :|......||.                 :.|.|...||.:..::|:.:..|: ..|:|.
pombe   746 ------EEAVKQKETEK-----------------EVPPTGPKASEIKDSVSSNNAVPS-STFNFV 786

  Fly  1417 AP-------SSSSTVSSSTTSTSANPAAVKPMFSWSGAGSAVSSTSSSQQPVAKAPTLGFGVSSS 1474
            :|       ::.:.:.:.||.|:.|                                     ::.
pombe   787 SPFAAVSEKTNENNIPNDTTKTNGN-------------------------------------ATK 814

  Fly  1475 TVTTTTTSTKVFAFTPASGLDPAAATSAPAAGAGFSFGSQSKPATTQNTGTFFFGQPTAVAPATP 1539
            .....|...|.||                     |||||                          
pombe   815 RTLEQTEDAKPFA---------------------FSFGS-------------------------- 832

  Fly  1540 TNPSVSSIFGAPATSTTASTSVSATTSTSTANAIASSFAPTSTPQLFGNWGEKKTDLTTFGASSG 1604
                                      :|..||..||:...|:.|||..:   .|||         
pombe   833 --------------------------TTEQANKKASTSNETTKPQLDTS---SKTD--------- 859

  Fly  1605 SGTTTTPSFGWSSNGDAAK-SNSAAVGSAAVPSSSASTMATP----IFGSSSMFGPSSSSNNTTS 1664
             |.|....|.::|..:|.| |.:.|.|     ..|||.:.||    .||::|  |..:||||..|
pombe   860 -GVTANAPFSFASAFNAPKPSTNTADG-----KDSASNLTTPSPAFSFGNNS--GVKASSNNNPS 916

  Fly  1665 TSTTSLPFGSAATTAATTPAGGNAALTGLFGNVGNSLAGVGAPVATTPAATAA--APLTNIFG-- 1725
            |::::.||...   .:..||..       ||:..:.....|    |.|||:|:  ||.|:.|.  
pombe   917 TNSSTAPFSFG---TSNKPAFS-------FGSATSKTTSEG----TAPAASASAPAPTTSAFSFG 967

  Fly  1726 ---------NPTPVAAAAPVFGSGSTIPSAG------FGA-----PAAAAPLAAPALPGAFNFGG 1770
                     ..||:|..|     |.|.|::|      |||     ||:....:.||...||.||.
pombe   968 ASNSSMNKEENTPMAKDA-----GDTAPASGFKSGFSFGANNSPQPASMFGTSTPAPSSAFAFGN 1027

  Fly  1771 ATAATPAASSAPFVFGSSTNEPLAKP---SFNFTGSAASSTAPAPAFNFTANTAATNNPSGG-DS 1831
            .:...||   ||..||..||.....|   .|.||.|.|.||| ||.|    ....|.||||. ::
pombe  1028 QSGTNPA---APAGFGGITNTATNNPPSTGFTFTPSNAGSTA-APMF----GAGNTPNPSGSINN 1084

  Fly  1832 HPRIFQFGSSQPAANNQFGGAGGATNNSAGGMPMFNFSPGAPQMQSTPNANALFQFSATSTAPAN 1896
            ..:.|.|||.:|             :|.|...|...||.||    :||:|   |..||:.:...|
pombe  1085 ASQAFAFGSGEP-------------SNPASNPPSTGFSFGA----ATPSA---FNASASQSPAPN 1129

  Fly  1897 IFAFNPPAAGNSAQSSQTARRKIRAPVRR 1925
            ...||  ...:::|::....|||..|..|
pombe  1130 GIQFN--LGSSNSQTNAPPGRKIAVPRSR 1156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup153NP_001097002.1 Nup153 <458..910 CDD:285770 98/508 (19%)
RanBP2-type Zn finger 864..883 CDD:275375 3/18 (17%)
zf-RanBP 903..931 CDD:279035 5/27 (19%)
RanBP2-type Zn finger 907..926 CDD:275375 2/18 (11%)
zf-RanBP 968..992 CDD:279035 1/23 (4%)
RanBP2-type Zn finger 968..987 CDD:275375 0/18 (0%)
zf-RanBP 1009..1038 CDD:279035 4/28 (14%)
RanBP2-type Zn finger 1013..1032 CDD:275375 0/18 (0%)
zf-RanBP 1072..1097 CDD:279035 6/24 (25%)
RanBP2-type Zn finger 1072..1091 CDD:275375 4/18 (22%)
zf-RanBP 1126..1155 CDD:279035 5/45 (11%)
RanBP2-type Zn finger 1130..1149 CDD:275375 3/24 (13%)
ZnF_RBZ 1239..1261 CDD:197784 1/21 (5%)
RanBP2-type Zn finger 1241..1260 CDD:275375 1/18 (6%)
nup124NP_593213.1 Nup_retrotrp_bd 1072..1158 CDD:287557 32/107 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23193
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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