DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nup153 and npp-7

DIOPT Version :9

Sequence 1:NP_001097002.1 Gene:Nup153 / 32630 FlyBaseID:FBgn0061200 Length:1929 Species:Drosophila melanogaster
Sequence 2:NP_001370374.1 Gene:npp-7 / 172234 WormBaseID:WBGene00003793 Length:1217 Species:Caenorhabditis elegans


Alignment Length:1547 Identity:367/1547 - (23%)
Similarity:581/1547 - (37%) Gaps:467/1547 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   403 LSAAAGG----------CGDSQSES-DMNEYHDNGEGHDGLRPSHYNSNSNLEFYGNLQSSKSIF 456
            :|..:||          .|.|.::| |.::.:|.|       .|:.:|.|:......|::..|:.
 Worm     1 MSDKSGGFFSSVGRFFSVGASATKSKDGDKSNDEG-------TSNSSSKSSPSASPALKNILSVD 58

  Fly   457 NRSNTAAQQSHRNSTWSLNSLTQRRRFNASI-YGSTSALSDSRLLSGSASNSGSASASSSP--FY 518
            |.:..|:.::..|:       :|..|..:.: |.|.:|| |.|.   ||||.......:.|  |:
 Worm    59 NEAKIASDETSVNT-------SQNHRIGSRLRYLSPTAL-DRRT---SASNGLEIDVDAVPDIFF 112

  Fly   519 QGRTTFGGNSGNNR--------LFSRSNLSSSAASSMLGLNSAGSSPAHQLHASMTGGIGYGMKA 575
               :|...::...|        :..:|..|.|...|.. ||.:...|.  |::||.     ..:.
 Worm   113 ---STPAVSTNRKRQLTELDKQILPQSFRSESVKRSRF-LNRSLLEPT--LNSSMN-----NERK 166

  Fly   576 VDM--------RPSDSGSLAETSV--GQGGSKKPGTGLSNTTMRILNLLESYSTPLIDAKRMG-- 628
            :||        ..|.:.|:...|:  .:.|:...|: ||..|..|...||..:||..:.:||.  
 Worm   167 MDMTWCGELTANHSPASSITNFSLLSRRSGATTNGS-LSTRTQEIFKKLEGANTPAKEVQRMSML 230

  Fly   629 ----------SSIKEHQSSRQQRQGTPATPYLRSTSASRNVSVPNHINELAELRSNKLLVPTMQQ 683
                      .|..|.:.......|||..|..::..|     :|:.|         :|:..||. 
 Worm   231 RAGIARPEKWGSFSESKVPNGSATGTPPPPLKKAGDA-----IPSRI---------QLISKTMG- 280

  Fly   684 LLERRRLHRVTQNSRDVVHSQNVRAGGENNQEKPKPTAPYVAPIDQSANHTQHTNKMRSRLSHQT 748
             :..||....|..:|....|:|...|..:                                |.::
 Worm   281 -MSARRAPYWTDLTRKRTSSKNGDTGSSD--------------------------------SMKS 312

  Fly   749 RNKETRTAEEEAPPPLDLPQISFPDMASAPKFDLIIKPTVPVVSKPSTTDPIQSSKSSNTNLSTT 813
            .|....|||..:...||||         |||             |.::|       :|.|.::::
 Worm   313 LNGNFATAELSSLFSLDLP---------APK-------------KTAST-------ASTTTINSS 348

  Fly   814 NS-KQMPNFLANPQPAAPIV--NFAANGNVSAISKPSKR-----TFTFSEPTPLSNFQENCIPKP 870
            || ||..:.:..|. ..|:.  .|..:.::..:.:.|::     |.|...|.||....|.. ||.
 Worm   349 NSRKQHASIMKGPD-GKPVSRNTFKLSDDIEEVDEDSQKLPPIPTTTLQNPQPLKLAPEYA-PKR 411

  Fly   871 KINRKYTFSAPAPLDDLRITNKQSQPTINGTPSSKEWECDTCMVRNKPEINKCVACETAKPVASA 935
            .......||..||:|  .:|...:..|.:...|.|..|       :..|.|   |..|.|..:.:
 Worm   412 GFLDDLAFSFTAPVD--LVTAVGTAKTASTASSHKASE-------SSSESN---AESTEKQTSES 464

  Fly   936 APVQAPLPPSTAAIDTQSFVG--FGDRFKKS---TTAWECDACMLSNKA--EASKCIACETPRKT 993
            :..::   .|..:.|::..||  .|...|:|   |:|....:...||::  ::|..:|.:.....
 Worm   465 SGNES---DSEESEDSEVDVGEENGSEVKESRPQTSADTISSAGGSNQSSKDSSPKVAKDAEPVV 526

  Fly   994 VAPKVNNFSPLITNAKSNEWECSVCLVRNKVEVSKCVACESAKPGATMALPAT------------ 1046
            |||     :|:: :|.|.:|||..|.......:|:|.||..|:||.:...|.:            
 Worm   527 VAP-----APVV-DAGSKKWECQSCFCSWDSTLSECGACGEARPGGSGTGPKSQPKPSEKQLVSN 585

  Fly  1047 -SNIAVATPSIITDGFGDRFKKSATAWECDACMLSNKAEASKCIACETPRKSSTPIANSSYPSIN 1110
             |:.|..|||.:..|||                              :...::|.||:::    :
 Worm   586 LSSFASNTPSTVKFGFG------------------------------SGASTTTTIASTT----S 616

  Fly  1111 NNLPAGSGFDISFTRKANMWECQTCLVMNKSSDEECIACQTPNSQARNSNSESALISSISSSSAS 1175
            |.:|.|||                                                    ||.|.
 Worm   617 NTIPFGSG----------------------------------------------------SSVAP 629

  Fly  1176 FSGSLSRPSSRSSSGSTSTCGSVCSGSIVSISSTTESAKALSAKKVPPKPDAGFQQLVAAQKTST 1240
            ..|:   |.:.:...:|..       :.:.::.||.::..::|              |.:....|
 Worm   630 LFGA---PKTTAPPPTTVP-------ATIPVAPTTIASAPVAA--------------VTSSSNGT 670

  Fly  1241 ---WECEACLAKNDMSRKTCICCEQMMPEAFNPAATTANSAASSVPKFRFGFSHVKEVVKPSVET 1302
               |||..|:..|..|...|.||..:        ...:..|:|:|    ||    ....||...|
 Worm   671 RVDWECPDCMVSNKASDDKCPCCSHV--------KYASAEASSNV----FG----NRAFKPLSST 719

  Fly  1303 TTTPAPTSAQFSFGFGQSNQGKDVADSKKTEAPKTFMFGVSKVEE---PKTVSFGTGIKETTATS 1364
            .:|       .|||.|         .|..|..|..|.||:||..|   ..|.:||...|  .|.|
 Worm   720 GST-------ISFGVG---------GSTATTQPSAFAFGLSKTTEVAPTSTPAFGLSAK--PAVS 766

  Fly  1365 STEATAPTPAAAAPAPVQFVFKAPTTATTASSLTTTISTTSNAPALGGFSFGAPSSSSTVSSSTT 1429
            |.....|:              ||....||.||...|:..:::...   ||.||.::|:.||.. 
 Worm   767 SAPVEKPS--------------APEVPKTAGSLFGNIAKPADSATT---SFLAPGAASSTSSLA- 813

  Fly  1430 STSANPAAVKPMFSWSGAGSAVSSTSSSQQPVAKAPTLGFGVSSST-VTTTTTSTKVFAFTPASG 1493
                 |.|...:|..| .||..:...::....||....|..:...| ||||..|..:.:.|.::.
 Worm   814 -----PTAGSSLFGGS-TGSIFNLNKTNTTETAKPGLFGSILDKETHVTTTPVSVALPSSTDSTQ 872

  Fly  1494 LDPAAATSAP-----------AAGAGFSFGSQSKPATTQNTGTFFFGQP-TAVAP-ATPTNPSV- 1544
            ...|..|.||           :.|....||: ||....:.:.|..||.| ||.|| :|.|..:| 
 Worm   873 SKSAIPTIAPTMSLFGNSSTGSFGGSSMFGN-SKTELPKISSTLSFGNPTTAAAPVSTATAEAVK 936

  Fly  1545 SSIFGAPATSTTASTSVSATTSTSTA-NAIASSFAPTSTPQLFG---NWGEKKTDLTTFGASSGS 1605
            :::||  :.|.:||||:....|:||| |...:..|.::|..:||   ::|:.....||.||.:..
 Worm   937 TNVFG--SNSASASTSLFGAGSSSTATNLFTTKPADSTTSSIFGKPISFGDDSGTTTTDGAPAKR 999

  Fly  1606 GTTTTPS----FGWSSNGDAAKSNSAAVGSAAVPSSSASTMATPIFGSSS----MF-GPSSSS-- 1659
            |..::.|    ||.....:..|  ....|:   |:|:|||.:..:||.:|    || ||||||  
 Worm  1000 GLFSSDSQKLQFGGQQKVEMPK--FTGFGN---PASTASTTSGSLFGGASTNPPMFGGPSSSSIP 1059

  Fly  1660 ----NNTTST----STTSLPFGSAATTAATTPAGGNAALTGLFGNVGNSLAGVGAPVATTPAATA 1716
                :|::||    |:|:.|||:|.||:.          :|:||..||.        .:.|..::
 Worm  1060 AFSTSNSSSTSGFPSSTATPFGNAGTTST----------SGVFGAFGNK--------PSQPGLSS 1106

  Fly  1717 AAPLTNIFGNPTPVAAAAPVFGSGSTIPSAGFGAPAAAAPLAAPALPGAFNFGGATAATPAASSA 1781
            ::...::||. .|..::.| || |::.....|||.::.....|.. .|.|.||.|..:.||.::|
 Worm  1107 SSSTNSLFGQ-APADSSNP-FG-GTSNNGFNFGASSSTTGATAGG-GGVFQFGNAATSAPAPTAA 1167

  Fly  1782 PFVFGSSTNEPLAKPSFNFTGSAASSTAPAP-----AFNFTANTAATNNPSG 1828
            |   |..        :|.|.|:.:...||||     ||::.|       |||
 Worm  1168 P---GGG--------AFQFGGNMSVPQAPAPGGMENAFSYQA-------PSG 1201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup153NP_001097002.1 Nup153 <458..910 CDD:285770 106/492 (22%)
RanBP2-type Zn finger 864..883 CDD:275375 5/18 (28%)
zf-RanBP 903..931 CDD:279035 7/27 (26%)
RanBP2-type Zn finger 907..926 CDD:275375 3/18 (17%)
zf-RanBP 968..992 CDD:279035 4/25 (16%)
RanBP2-type Zn finger 968..987 CDD:275375 3/20 (15%)
zf-RanBP 1009..1038 CDD:279035 10/28 (36%)
RanBP2-type Zn finger 1013..1032 CDD:275375 6/18 (33%)
zf-RanBP 1072..1097 CDD:279035 0/24 (0%)
RanBP2-type Zn finger 1072..1091 CDD:275375 0/18 (0%)
zf-RanBP 1126..1155 CDD:279035 0/28 (0%)
RanBP2-type Zn finger 1130..1149 CDD:275375 0/18 (0%)
ZnF_RBZ 1239..1261 CDD:197784 9/24 (38%)
RanBP2-type Zn finger 1241..1260 CDD:275375 7/18 (39%)
npp-7NP_001370374.1 RanBP2-type Zn finger 540..559 CDD:275376 6/18 (33%)
ZnF_RBZ 673..696 CDD:197784 9/22 (41%)
RanBP2-type Zn finger 674..693 CDD:275376 7/18 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23193
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4945
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.040

Return to query results.
Submit another query.