DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup153 and nup153

DIOPT Version :10

Sequence 1:NP_001097002.1 Gene:Nup153 / 32630 FlyBaseID:FBgn0061200 Length:1929 Species:Drosophila melanogaster
Sequence 2:NP_001265678.1 Gene:nup153 / 100492369 XenbaseID:XB-GENE-6453061 Length:1547 Species:Xenopus tropicalis


Alignment Length:1874 Identity:462/1874 - (24%)
Similarity:710/1874 - (37%) Gaps:568/1874 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 RRNHLNL----YGSQRQRE--------------PAY--NFFTGNEAAEGSTGDLPHSIRRSLNIP 315
            ||.||:.    |...|||:              |.:  |:|...|...|..    |:....:...
 Frog    22 RRYHLSSGRTPYSKSRQRQGIISRVTDAVKSIVPGWLQNYFNKQEEERGRA----HNASELIVED 82

  Fly   316 FGGSSTATSYNNSLSSLPNHKRPSLIGKQTHRRDLTMDETGTGPAMSSEEHLNHLLRISRTNNNT 380
            ..|....|.::..:....|    |..|:.|....:.:||.....:.|:         |:.|:..|
 Frog    83 TEGRQNNTEHHIYVDDEGN----SASGRVTPEPIINVDEEVPSTSQSA---------INDTDALT 134

  Fly   381 SNNNNNNNNNNNVIETKTRRSELSAAAGGCGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSNLEF 445
            ..:.:..|.|.|:.::.....:.:.:....|.| ..|.:.|..|:...||.      ::.|....
 Frog   135 RPSLHRANLNFNLFDSPAMNCQPTTSTFPIGTS-GFSLVKEIKDSTSQHDD------DNISTTSG 192

  Fly   446 YGNLQSSKSIFNRSNTA-----AQQSHRNSTWSLN-SLTQRR-RFNASIYGSTSALSDSRLLSGS 503
            :.:..|.|.:....|..     :.:..|:.:.|.| |:|.:: .||.|.:.|         ||.|
 Frog   193 FSSRASDKDMAVSKNVGVPPLWSPEVDRSQSLSHNSSMTSKKPTFNLSAFSS---------LSPS 248

  Fly   504 ASNSG--SASASSSPFYQGRTTFGGNSGNNRLFSRSNLSSSAASSMLGLNSAGSSPAHQLHASMT 566
            ..|:.  ::....||||.|:||:.|             :::..||.:..|...:....|:.|...
 Frog   249 LGNASFVNSQLGDSPFYPGKTTYQG-------------AAAVRSSRVRSNPYQAPLRRQVKAKPA 300

  Fly   567 GGIGYGMKAVDMRPSDSGSLAETSVGQGGSKKPGTGLSNTTMRILNLLESYSTPLIDAKRMGSS- 630
            ....||:                             .|:|..|||..||..|:||.||||:.|: 
 Frog   301 NAQQYGV-----------------------------TSSTARRILQSLEKMSSPLADAKRIPSNS 336

  Fly   631 -----------IKEHQSSRQ---------QRQGTP----------------ATPYLRSTSASRNV 659
                       |.|:.|.|:         |:..||                .||...|.::||.|
 Frog   337 LSHTPEKSLMDIAENPSKRKKVESPFPPVQKLVTPKSISVSTNRSLYIKPSLTPSAVSNTSSRRV 401

  Fly   660 SVPNHINELAE-----LRSN-------KLLVPTMQQLLERRRLHRVTQNSRDVVHSQNVRAGGEN 712
            ....| ||..|     ::|.       |...||..:||.                    |.||: 
 Frog   402 QPDKH-NESRENNVQTVQSTSHSFSYPKFSTPTSNELLS--------------------RGGGK- 444

  Fly   713 NQEKPKPTAPYVAPIDQSANHTQHTNKMRSRLSHQTRNKETRTAEEEAPPPLDLPQISFPDMASA 777
                                      .||.:.||.:    |:.|||.:......|..:|    |:
 Frog   445 --------------------------MMRQKGSHYS----TKPAEETSGLTSSSPLFTF----SS 475

  Fly   778 PKFDLIIKPT----------------VPVVSKPSTTDPIQS-----SKSSNTNLSTTNSK----- 816
            |    |:|.|                ||.|...|.|..|.|     |.::.|:::..||.     
 Frog   476 P----IVKSTESNAQSPGSSVDFTFSVPTVKVSSATTSIDSKVSAVSTTAKTHIAVNNSSAKDSD 536

  Fly   817 ---------------------QMPNFLANPQPAAPIVNFAANGNVSAISKPSKRTFTFSEPTPLS 860
                                 :.|.|.::|            ...::.|.|::.|.|||:..   
 Frog   537 EQVGFCKPAKTLKEGSVLDILRSPGFSSSP------------SQQTSASTPNRSTSTFSKTV--- 586

  Fly   861 NFQENCIPKPKINRKYTFSAPAPLDDLRITNKQSQPTINGTPSSKEWECDTCMVRNKPEINKCVA 925
               .|.....|:.             |.:..||:...         |:|..|...|....:.|.|
 Frog   587 ---GNAFSPVKVT-------------LGVGGKQALGL---------WQCSACCHENMASDSNCTA 626

  Fly   926 CETAKPVASAAPVQAPLPP----STAAIDTQSFVGFGDRFKKSTTAWECDACMLSNKAEASKCIA 986
            |..|||..:....:.|..|    :...:...|..|.||:||.....|:||.|::.||||.:||:|
 Frog   627 CCAAKPQPAETNKKLPASPQHSNTKTTVPLSSVQGLGDKFKLPAGTWDCDTCLVQNKAEVTKCVA 691

  Fly   987 CETPRKTVAPKVN----------NFSPL----------ITNAKSNE--WECSVCLVRNKVEVSKC 1029
            ||||:.....|.|          |.:|.          |||.:..|  |:|:.|.::||.|.:.|
 Frog   692 CETPKPGTGMKANLLLPPATKALNSAPTPSAFVSSSGSITNEEKPEGSWDCTGCRMQNKTENNTC 756

  Fly  1030 VACESAKPGATMALPATSNIAVATPSIITDGFGDRFKKSATAWECDACMLSNKAEASKCIACETP 1094
            |||::.||||..:|      :.|.||.:. |..|.|||.|.:|:||.|::.||.||:||:|||:.
 Frog   757 VACKADKPGAIKSL------STAAPSGLL-GLLDHFKKPAGSWDCDVCLIQNKPEATKCVACESA 814

  Fly  1095 RKSSTPIANSSYPSINNN---LPAGSGFDISFTRKANMWECQTCLVMNKSSDEECIACQT--PNS 1154
            :..:.|....::.::..:   :..|.|....|.:.|..|:|:.|||.||....:||||::  |.:
 Frog   815 KPGTKPELKGTFGTVQTSAAPVSLGLGLLDQFKKSAGSWDCEVCLVENKPEANKCIACESAKPGT 879

  Fly  1155 QARNSNSESALISSISSSSASF------SGSLSRPSSRSSSGSTS------TCGSVCSGSIVSIS 1207
            :|......::.:|: .:::.:|      |.|.....|.:|:.|||      ..|....| :.|.|
 Frog   880 KAELKGFGTSTLSA-GTTAPTFKFGVQPSDSAGELKSGASTDSTSGFSFAKPIGDFKFG-LASAS 942

  Fly  1208 STTESAKALS---AKKVPPKPDAGFQQLVAAQKTSTWECEACLAKNDMSRKTCICCEQMMPEAFN 1269
            :|||.....|   ......:..|||:..||:...:..:.........:|...          :|:
 Frog   943 ATTEETGKKSFTFGTSTSNQASAGFKFGVASSAQTNQDTSGGFTFGSVSSTV----------SFS 997

  Fly  1270 PAATTANSAASSVPKFRFGFSHVKEVVKPSVETTTTPAPTSAQFSFGFGQSNQGKDVADSKKTEA 1334
            ||||.:.|....||......|........|.|.....||  |..:|.||:::|.|:...:     
 Frog   998 PAATYSGSTGLQVPAADDDSSRASAAGLKSAEEKKPEAP--AVTAFSFGKTDQNKETVST----- 1055

  Fly  1335 PKTFMFGVSKVEE-----PKTVSFGTGIKETTATSSTEATAPTPAAAAPAPVQFVFKAPTTATTA 1394
              :|:||  |.:|     |...|||.|:|:.                ...|.||:|..|..    
 Frog  1056 --SFIFG--KKDEKTDSAPTGNSFGFGLKKD----------------GEEPKQFLFGKPEP---- 1096

  Fly  1395 SSLTTTISTTSNAPALGGFSFGAPSSSSTVSSSTTSTSANPAAVKPMFSWSGAGSAVSSTSSSQQ 1459
               |...||:|.|.|  ||:|..               :||...|.:                :|
 Frog  1097 ---TKEDSTSSTASA--GFAFRV---------------SNPTEKKDV----------------EQ 1125

  Fly  1460 PVAKAPTLGFGVSSSTVTTTTTSTKVFAFTPASGLDPAAATSAPAAGAGFS---FGSQSKPATTQ 1521
            ||...    |...|.|.||...::|    .|.|.|...::|||.::.:|.|   |||.::.:|..
 Frog  1126 PVKSV----FAFGSQTSTTDAGASK----QPFSFLTGVSSTSASSSASGVSSSVFGSVAQSSTPA 1182

  Fly  1522 NTGTFFFGQPTAVAPATPTNPSVSS-IFG------APATSTTASTSVSATTSTSTANAIASSFAP 1579
            |... .||..|:..|     |:||| :||      |||:|:|...:|:.:::.|.::::..:..|
 Frog  1183 NPSN-VFGSATSSNP-----PAVSSGVFGNLNPSNAPASSSTLFGNVAPSSTPSGSSSLFGTANP 1241

  Fly  1580 TSTP----QLFGNWGEKKTDLTTFGASSGSGTTTTPSFGWSSNGDAAKSNSAAVGSAAVPSSSAS 1640
            :|||    .|||...:....:.:.|..:.:......|...|..|.||.:|::| .||.:..|:..
 Frog  1242 SSTPASSSSLFGTAAKLSAPVGSGGVFNSAAPVPPASTSSSVFGSAAPANTSA-NSANIFGSAGG 1305

  Fly  1641 TMATP---IFG-----SSSMFGPSSSSNNT-----------TSTSTTSLPFGSAATTAATTPA-- 1684
            |...|   :||     :|::||.||.|.:|           ||..|::.||...|.:|:||||  
 Frog  1306 TSGAPGTFVFGQPASTTSTVFGNSSESKSTFAFSGQETKPVTSAITSATPFVFGAESASTTPAAP 1370

  Fly  1685 GGNAALTGLFGNVGNSLAGVGAPVATTPAATAAAPLTNIFGNPTPVAAAAP-VFGSGSTIPSAGF 1748
            |.|      ||....|          ....|:::|.  |||. .|.|:|:| :....:.:|:.|.
 Frog  1371 GFN------FGRTNTS----------NVTGTSSSPF--IFGG-GPTASASPSLTAHANPVPAFGQ 1416

  Fly  1749 GAPAAAAPLAAPALPGAFNFGGATAATPAASSAPF-VFGSSTNEP------LAKPSFNFTGSAAS 1806
            .|.::.||.          ||.:|:..||.:|... .|||||.:|      .|:|||   ||:|:
 Frog  1417 SANSSTAPA----------FGSSTSVFPAGNSQQVPAFGSSTAQPPVFGQQAAQPSF---GSSAA 1468

  Fly  1807 STAPAPAFNFTANTAATNNPSGGDSHPRIFQFGSSQPAANNQFGGAGGATNNSAGGMPMFNFSPG 1871
                               ||.|..    ||||::   .|..|     .|.||:||:..|..:.|
 Frog  1469 -------------------PSAGSG----FQFGNN---TNFNF-----TTPNSSGGVFTFGANAG 1502

  Fly  1872 APQMQSTPNANALFQFSATSTAPANIFAFNPPAAGNSAQSSQTARRKIRAPVRR 1925
            :......|.    |.|:|.::      .||....|.|..:|..:.|||:...||
 Frog  1503 STPQPPAPG----FMFNAAAS------GFNVGTNGRSTPASSISNRKIKTARRR 1546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup153NP_001097002.1 RanBP2-type Zn finger 864..883 CDD:275375 2/18 (11%)
zf-RanBP 903..931 CDD:395516 8/27 (30%)
RanBP2-type Zn finger 907..926 CDD:275375 5/18 (28%)
zf-RanBP 968..992 CDD:395516 15/23 (65%)
RanBP2-type Zn finger 968..987 CDD:275375 10/18 (56%)
zf-RanBP 1009..1038 CDD:395516 12/30 (40%)
RanBP2-type Zn finger 1013..1032 CDD:275375 8/18 (44%)
zf-RanBP 1072..1097 CDD:395516 13/24 (54%)
RanBP2-type Zn finger 1072..1091 CDD:275375 10/18 (56%)
zf-RanBP 1126..1155 CDD:395516 13/30 (43%)
RanBP2-type Zn finger 1130..1149 CDD:275375 9/18 (50%)
ZnF_RBZ 1239..1261 CDD:197784 1/21 (5%)
RanBP2-type Zn finger 1241..1260 CDD:275375 1/18 (6%)
nup153NP_001265678.1 Nup153 120..566 CDD:462533 115/572 (20%)
ZnF_RBZ 606..629 CDD:197784 7/31 (23%)
RanBP2-type Zn finger 608..627 CDD:275375 5/18 (28%)
zf-RanBP 669..698 CDD:395516 15/28 (54%)
RanBP2-type Zn finger 673..692 CDD:275375 10/18 (56%)
zf-RanBP 736..765 CDD:395516 12/28 (43%)
RanBP2-type Zn finger 740..759 CDD:275375 8/18 (44%)
zf-RanBP 788..817 CDD:395516 14/28 (50%)
RanBP2-type Zn finger 792..811 CDD:275375 10/18 (56%)
zf-RanBP 849..878 CDD:395516 12/28 (43%)
RanBP2-type Zn finger 853..872 CDD:275375 9/18 (50%)
PFM_aerolysin_family <917..1010 CDD:394801 24/103 (23%)
Nucleoporin_FG2 1252..>1425 CDD:435043 53/192 (28%)
Nucleoporin_FG2 1353..>1511 CDD:435043 62/220 (28%)

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