DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment His2B:CG17949 and LOC110439971

DIOPT Version :9

Sequence 1:NP_724342.1 Gene:His2B:CG17949 / 326273 FlyBaseID:FBgn0061209 Length:123 Species:Drosophila melanogaster
Sequence 2:XP_021333785.1 Gene:LOC110439971 / 110439971 -ID:- Length:90 Species:Danio rerio


Alignment Length:87 Identity:64/87 - (73%)
Similarity:67/87 - (77%) Gaps:19/87 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQ 93
            |.||:|||||:||||||||||||||||                   |||||||||||||||||||
Zfish     5 RTRKKSYAIYVYKVLKQVHPDTGISSK-------------------ASRLAHYNKRSTITSREIQ 50

  Fly    94 TAVRLLLPGELAKHAVSEGTKA 115
            |||||||||||||||||||||:
Zfish    51 TAVRLLLPGELAKHAVSEGTKS 72

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
His2B:CG17949NP_724342.1 H2B 33..121 CDD:197718 61/83 (73%)
LOC110439971XP_021333785.1 Histone 3..72 CDD:329110 63/85 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1536672at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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