DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SMC3 and TTN7

DIOPT Version :9

Sequence 1:NP_523374.2 Gene:SMC3 / 32627 FlyBaseID:FBgn0015615 Length:1200 Species:Drosophila melanogaster
Sequence 2:NP_001077968.1 Gene:TTN7 / 817259 AraportID:AT2G27170 Length:1204 Species:Arabidopsis thaliana


Alignment Length:1224 Identity:485/1224 - (39%)
Similarity:775/1224 - (63%) Gaps:47/1224 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQRQSLL 65
            |.|||:||:||||||:|...|.|..:.|.|||.|||||||||:||:|||||.:.:||.|.|.:||
plant     1 MFIKQVIIEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLRSEDRHALL 65

  Fly    66 HEGTGARVISAYVEIIFDNSDNRVPIDKEEIFLRRVIGAKKDQYFLNKKVVPRNEVVNLLESAGF 130
            |||.|.:|:||:|||:|||||||.|:|||||.|||.:|.|||.|||:.|.:.:.||:||||||||
plant    66 HEGAGHQVVSAFVEIVFDNSDNRFPVDKEEIRLRRTVGLKKDDYFLDGKHITKGEVMNLLESAGF 130

  Fly   131 SSSNPYYIVKQGKINQMATAADSYRLKLLREVAGTRVYDERKEESLNLLRETDSKVEKISEYLKT 195
            |.:||||:|:||||..:....|..||.||:|:.|||||:||:.|||.:::||.:|.::|.|.:..
plant   131 SRANPYYVVQQGKIASLTLMKDIERLDLLKEIGGTRVYEERRRESLRIMQETGNKRKQIIEVVHY 195

  Fly   196 IEDRLQTLEEEKEELKEYQKWDKTRRTLEYIRYETELKDTKKALDELQLQR-KSSSDKKKIYNIE 259
            :::||:.|:||||||::||:.||.|::|||..|:.||.|.::.|:::::.| |:|.:..|:|: .
plant   196 LDERLRELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDAREKLEQVEVARTKASEESTKMYD-R 259

  Fly   260 IQKAQEKIKDVQKNLKEAKKKVQSTKEERSVLMTEQQQLLREKTKLDLTIVDLNDEVQGDNKSKE 324
            ::|||:..|.:.::|||..|::|:..:|:..:..:|.:.|::||||:|.:.|..|.:.|:.:||.
plant   260 VEKAQDDSKSLDESLKELTKELQTLYKEKETVEAQQTKALKKKTKLELDVKDFQDRITGNIQSKN 324

  Fly   325 RADQELKNLKVTIAEREKELDDVKPKYEAMKRKEEDCSRELQLKEQKRKELYAKQGRGSQFSSRE 389
            .|.::|..::..:.:..:||:.:||.||:...||...|:.:...|:....||.||||.:|||::.
plant   325 DALEQLNTVEREMQDSLRELEAIKPLYESQVDKENQTSKRINELEKTLSILYQKQGRATQFSNKA 389

  Fly   390 DRDKWITNELKSISKQTRDKIAHHAKLVEDLKKDATSEKDLGQKIEEHSSELEQLRLQIDEHNKK 454
            .||||:..|::.:.:..........||.:::.:..|...:..:.|::|..|:.:|..:|.:.::.
plant   390 ARDKWLRKEIEDLKRVLDSNTVQEQKLQDEILRLNTDLTERDEHIKKHEVEIGELESRISKSHEL 454

  Fly   455 YYELKKTKDQHQSMRNELWRKETQMTQQLQTHKEELSRADQALRSMAGKPILNGCDSVRKVLDSF 519
            :...|:.:|:.|..|.|.|.:|:|::.::...|.||.||.:.|.......:..|.:|:|::...:
plant   455 FNTKKRERDEEQRKRKEKWGEESQLSSEIDKLKTELERAKKNLDHATPGDVRRGLNSIRRICADY 519

  Fly   520 VERGGQSAEIARAYYGPVIENFSCDKTIYTAVEVTAANRLFHHIVESEYEGTQILKEMNKLKLPG 584
            ...|         .:||::|...||:..:|||||||.|.||:.:||::...|:|::.:|.|| .|
plant   520 RING---------VFGPLVELVDCDEKFFTAVEVTAGNSLFNVVVENDDISTKIIRHLNSLK-GG 574

  Fly   585 EVTFMPLNRLQVKIHDYPDDPDSIPMISKLKYDEQHDKALRYIFGKTLICRNLERATELAKSTGL 649
            .|||:||||::....:||.|.|:||::.|||:|.:.:.||..:||:|::||:|..||.:||:..|
plant   575 RVTFLPLNRIKAPRVNYPKDSDAIPLLKKLKFDSKFEPALGQVFGRTVVCRDLNVATRVAKNDDL 639

  Fly   650 DCVTLDGDQVSSKGSLTGGYFNTSRSRLEMQKKRTEYTSQIAEFEKKLSKLRNELKSTENNINSI 714
            ||:|::|||||.||.:|||:::..||:|.......:.|..|.|.||:|..:|.:|:..:..|..:
plant   640 DCITMEGDQVSRKGGMTGGFYDHRRSKLRFMNIIMQNTKSINEKEKELEDVRRQLQVIDQQITQL 704

  Fly   715 VSEMQKTETKQGKSKDVFEKVQGEIRLMKEELVRIEQYRAPKERSLAQCKASLESMTSTKSSLEA 779
            |:|.|:.|......|...|:::.||....::...|.:....||:.|...:..::.:.|:.|..||
plant   705 VTEQQRLEADWTLCKLQVEQLKQEIANANKQKHAIHKAIEYKEKLLGDIRTRIDQVRSSMSMKEA 769

  Fly   780 ELKQELMSTLSSQDQREIDQLNDDIRRLNQENKEAF-TQRMQFEVRKNKLDNLLINNLFRRRDEL 843
            |:..||:..|:.:::.::.:||.:|:.| :|.|.|: ..|::.|.||.:|:..:..||.||..||
plant   770 EMGTELVDHLTPEEREQLSKLNPEIKDL-KEKKFAYQADRIERETRKAELEANIATNLKRRITEL 833

  Fly   844 IQALQEI-------SVEDRKRKLNNCKTELVSAEKRIKKVNSDLEEIEKRVMEAVQLQKELQQEL 901
            ...:..|       |...::::|::.|..:..|.|.:|.|...::|..|::.:.    |:.:.:|
plant   834 QATIASIDDDSLPSSAGTKEQELDDAKLSVNEAAKELKSVCDSIDEKTKQIKKI----KDEKAKL 894

  Fly   902 ETHVRKEKEAEENLNKDSKQLEKWSTKENMLNEKIDECTEKIASLGAVPLVD---PSYTRMSLKN 963
            :|   .|.:.:..|....|:||:..:..|.|..|.||.|:||..||  ||..   .:|.|.::|.
plant   895 KT---LEDDCKGTLQDLDKKLEELFSLRNTLLAKQDEYTKKIRGLG--PLSSDAFDTYKRKNIKE 954

  Fly   964 IFKELEKANQHLKKYNHVNKKALDQFLSFSEQKEKLYRRKEELDIGDQKIHMLIQSLEMQKVEAI 1028
            :.|.|.:.::.|::::|||||||||:::|:||:|:|..|:.|||.||:||..||..|:.:|.|:|
plant   955 LQKMLHRCSEQLQQFSHVNKKALDQYVNFTEQREELQNRQAELDAGDEKIKELITVLDQRKDESI 1019

  Fly  1029 QFTFRQVAQNFTKVFKKLVPMGAG-FLILKTKDNEGDEMEKEVENS----------DAFTGIGIR 1082
            :.||:.||.:|..||.:||..|.| .:|:|.||.:.|:.:.:.::.          :.:.|:.::
plant  1020 ERTFKGVAHHFRDVFSELVQDGYGNLIIMKKKDLDNDDEDDDDDDGGREAVTEGRVEKYIGVKVK 1084

  Fly  1083 VSFTGVEAEMREMNQLSGGQKSLVALALIFSIQKCDPAPFYLFDEIDQALDAMHRKAVANMIHEL 1147
            ||||| :.|.:.|.|||||||::|||||||:||:|||||||||||||.|||..:|.||.|:|..|
plant  1085 VSFTG-QGETQLMKQLSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNLIRRL 1148

  Fly  1148 SDT--AQFITTTFRPELLENAHKFYGVRFRNKVSHIDCVTREEAKDFVEDDSTH 1199
            :|.  .|||||||||||:..|.|.|||..:|:||.::.:::::|.||:|.|.:|
plant  1149 ADDYGTQFITTTFRPELVRVADKIYGVFHKNRVSIVNVISKDQALDFIEKDQSH 1202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC3NP_523374.2 SMC_N 2..1180 CDD:280601 477/1202 (40%)
ABC_SMC3_euk 3..>159 CDD:213239 97/155 (63%)
SMC_hinge 533..643 CDD:214944 50/109 (46%)
TMPIT 678..>760 CDD:285135 20/81 (25%)
CHD5 <780..>822 CDD:282299 12/42 (29%)
P-loop_NTPase <1088..1182 CDD:304359 60/95 (63%)
TTN7NP_001077968.1 Smc 1..1196 CDD:224117 481/1216 (40%)
ABC_SMC3_euk 3..>166 CDD:213239 101/162 (62%)
CDC37_N <185..288 CDD:296150 39/103 (38%)
SMC_hinge 522..633 CDD:214944 51/120 (43%)
P-loop_NTPase <1070..1185 CDD:304359 66/115 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 834 1.000 Domainoid score I5
eggNOG 1 0.900 - - E1_COG1196
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3974
Inparanoid 1 1.050 882 1.000 Inparanoid score I58
OMA 1 1.010 - - QHG54174
OrthoDB 1 1.010 - - D119789at2759
OrthoFinder 1 1.000 - - FOG0003940
OrthoInspector 1 1.000 - - oto4126
orthoMCL 1 0.900 - - OOG6_101525
Panther 1 1.100 - - LDO PTHR43977
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3237
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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