| Sequence 1: | NP_523374.2 | Gene: | SMC3 / 32627 | FlyBaseID: | FBgn0015615 | Length: | 1200 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_598547.1 | Gene: | Smc4 / 70099 | MGIID: | 1917349 | Length: | 1286 | Species: | Mus musculus |
| Alignment Length: | 1292 | Identity: | 308/1292 - (23%) |
|---|---|---|---|
| Similarity: | 566/1292 - (43%) | Gaps: | 232/1292 - (17%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 3 IKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQRQSLLHE 67
Fly 68 GTGARVI-SAYVEIIFDNSDNRVPIDKE----------EIFLRRVIGAKKDQ---YFLNKKVVPR 118
Fly 119 NEVVNLLESAGFSSSNPYYIVKQGKINQMA-------TAADSYRLKLLREVAGTRVYDE------ 170
Fly 171 RKEESLNLLRETDSKVEKISEYLKTIEDRLQTLEEEKEELKEY-----QKWDKTRRTLEYIRYE- 229
Fly 230 ----TELKDTKKALDELQLQRKSSSDKKKIYNIEIQKAQEKIKDVQKNLKEAKKKVQSTKEERSV 290
Fly 291 LMTEQQQLLREKTK-LDLTIVDLNDEVQGDNKSKERADQELKNL----KVTI-----------AE 339
Fly 340 REKELDDVKPKYEAMKRKEEDCSRELQLKEQKRKELY-----AKQGRGSQFSSREDRDKWITNEL 399
Fly 400 KSISKQTRDKIAHHAKLV---EDLKKDATSEKDLGQKIEEHSSELEQLRLQIDEHNKKYYELKKT 461
Fly 462 KDQHQSMRNELWRKETQMTQQLQTHKEELSRADQALRSMAGKPILNGCDSVRKVLDSFVERGGQS 526
Fly 527 AEIARAY-----YGPVIENFS------CDKTIYTAVEVTAANRLFHHIVESEYEGTQILKEMNKL 580
Fly 581 KLPGEVTFMPLNRLQV------KIHDYPDDPDSIPMISKLKYDEQHDKALRYIFGKTLICRNLER 639
Fly 640 ATELA--KSTGLDCVTLDGDQVSSKGSLTGG--------------------YFNTSRSRLEMQKK 682
Fly 683 RT-EYTSQIAEFEKKLSKLRNELKSTENNINSIVSEMQKTETKQGKSKDVFEKVQGEIRLMKEEL 746
Fly 747 VRIEQYRAPK---ERSLAQCKASLESMTSTKSSLEAELKQELMSTLSSQDQREIDQLNDDIRRLN 808
Fly 809 QENKEAFTQRMQFEVRKNKLDNLLINNLFRRRDELIQALQEISVEDRKRKLNNCKTELVSAEKRI 873
Fly 874 KKVNSDLEEIEKRVMEAVQLQKELQQELETHVRKEKEAEENLNKDS----KQLEKWSTKENMLNE 934
Fly 935 KIDECTEKIASLGAVPLVD-PSYTRMSLKNIFKELEKANQHLKKYNHVNKKALDQFLSFSEQKEK 998
Fly 999 L-----YRRKEELDIGDQKIHMLIQSLEMQKVEAIQFTFRQVAQNFTKVFKKLVPMGAGFLIL-- 1056
Fly 1057 KTKDNE-----GDEMEKE-VENSDAFTGIGIRVSFTGVEAEMREMNQLSGGQKSLVALALIFSIQ 1115
Fly 1116 KCDPAPFYLFDEIDQALDAMHRKAVANMIHELSDTAQFITTTFRPELLENAHKFYGV 1172 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| SMC3 | NP_523374.2 | SMC_N | 2..1180 | CDD:280601 | 308/1292 (24%) |
| ABC_SMC3_euk | 3..>159 | CDD:213239 | 52/176 (30%) | ||
| SMC_hinge | 533..643 | CDD:214944 | 28/126 (22%) | ||
| TMPIT | 678..>760 | CDD:285135 | 13/85 (15%) | ||
| CHD5 | <780..>822 | CDD:282299 | 7/41 (17%) | ||
| P-loop_NTPase | <1088..1182 | CDD:304359 | 31/85 (36%) | ||
| Smc4 | NP_598547.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..51 | ||
| SMC_N | 81..1272 | CDD:308206 | 308/1292 (24%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_COG1196 | |
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 2 | 1.810 | |||||