Sequence 1: | NP_523374.2 | Gene: | SMC3 / 32627 | FlyBaseID: | FBgn0015615 | Length: | 1200 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_113871.2 | Gene: | Smc1a / 63996 | RGDID: | 61991 | Length: | 1233 | Species: | Rattus norvegicus |
Alignment Length: | 1330 | Identity: | 319/1330 - (23%) |
---|---|---|---|
Similarity: | 589/1330 - (44%) | Gaps: | 290/1330 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 3 IKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQRQSLLHE 67
Fly 68 GTGARV-----ISAYVEIIF--DNSDNRVPIDKEEIFLRRVIGAKKDQYFLNKKVVPRNEVVNLL 125
Fly 126 ESAGFSSSNPYYIVKQGKINQMATAADSYRLKLLREVAGT----RVYDERKEESLNLLRETDSKV 186
Fly 187 EKISEYLKTIEDRLQTLEEEKEELKEYQKWDKTRRTLEYIRYETELKDTKKALDELQLQR--KSS 249
Fly 250 SDKKKIYNIEIQKAQEKIKDVQKNLKEAKKKVQSTKEERSVLMTEQQQLLREKTKLDLTIVDLND 314
Fly 315 EVQGDNKSKERADQELKNLKVTIAEREKELDDVKPKYEAMKRKEEDCSRELQLKEQKRKELYAKQ 379
Fly 380 GRGSQFSSREDRDKWIT---NELKSISKQTRDKIAHHAKLVEDLKK---DATSEKDL-----GQK 433
Fly 434 IEEHSSELEQLRLQIDEHNKKYYELKKTKDQHQSMRNELWRKETQMTQQLQTHKEELSRADQALR 498
Fly 499 SMAGKPILNGCDSVRKVLDSFVERGGQSAE---------IARAY----YGPVIENFSC---DKTI 547
Fly 548 YTAVEVTAANRLFHHIVESEYEG---TQILKEMNKLKLPGE-VTFMPLNRLQVKIHDYPDD---- 604
Fly 605 --PDSIPMISKLKYDEQH-DKALRYIFGKTLICRNLERATELA-------KSTGLDCVTLDGDQV 659
Fly 660 SSKGSLTGGYFN-TSRSRL-------EMQKKRTEYTSQIAEFEKKLSKLRNELKSTENNINSI-- 714
Fly 715 -----VSEMQKTETK------QGKSKDVFEKVQGEIRLMKEELVRIEQYRAPKERSLAQCKASLE 768
Fly 769 SMTSTKSSLEAELKQELMSTLSSQDQREIDQLNDDIRRLNQENKEAFTQRMQFEVRKNKLDNLL- 832
Fly 833 --INNLFRRRDEL-------------IQALQEIS------VEDRKRKLNNCKTELVSAEKRIKKV 876
Fly 877 NSDLEEIEKRVMEAVQLQKELQQELETHVRKEKEAEENLNKDSKQLEKWSTKENMLNEKIDECTE 941
Fly 942 KIASLGAVPLVDPSYTRMSLKNIFKELEKANQHLKKYNHVNKKALDQFLSFSEQKEKLYRRKE-- 1004
Fly 1005 ELDIGD---------------QKIHMLIQSLE----------------MQKVEAIQFTFRQVAQN 1038
Fly 1039 FTKVFKKLVPMGAGFLILKTKDNEG------------DEMEKEV---ENSDAFTG---------I 1079
Fly 1080 GIRVSFTGVEAEMREMNQLSGGQKSLVALALIFSIQKCDPAPFYLFDEIDQALDAMHRKAVANMI 1144
Fly 1145 HELSDTAQF--ITTTFRPELLENAHKFYGV 1172 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SMC3 | NP_523374.2 | SMC_N | 2..1180 | CDD:280601 | 319/1330 (24%) |
ABC_SMC3_euk | 3..>159 | CDD:213239 | 51/162 (31%) | ||
SMC_hinge | 533..643 | CDD:214944 | 40/127 (31%) | ||
TMPIT | 678..>760 | CDD:285135 | 17/94 (18%) | ||
CHD5 | <780..>822 | CDD:282299 | 8/41 (20%) | ||
P-loop_NTPase | <1088..1182 | CDD:304359 | 37/87 (43%) | ||
Smc1a | NP_113871.2 | SMC_N | 3..1210 | CDD:308206 | 319/1330 (24%) |
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 284..307 | 6/25 (24%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 350..369 | 4/23 (17%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 946..969 | 6/35 (17%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG1196 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |