DRSC/TRiP Functional Genomics Resources

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Protein Alignment SMC3 and EMC10

DIOPT Version :9

Sequence 1:NP_523374.2 Gene:SMC3 / 32627 FlyBaseID:FBgn0015615 Length:1200 Species:Drosophila melanogaster
Sequence 2:NP_730662.2 Gene:EMC10 / 40396 FlyBaseID:FBgn0052441 Length:227 Species:Drosophila melanogaster


Alignment Length:118 Identity:28/118 - (23%)
Similarity:46/118 - (38%) Gaps:24/118 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 LNKKVVPRNEVVNLLES--------AGFSSSNPYYIVKQGKINQMATAADSYRLKLLREVAGTRV 167
            |.||:...||...|..:        |.|.:||....:.|.::|.:...:    |:....|.|..|
  Fly    74 LLKKLALGNEFYRLKATVVYSNGAKAQFITSNKACRLLQAQLNDVLWVS----LEPSGYVTGITV 134

  Fly   168 YD-------ERKEESLNLLRETDSKVEKISEY--LKTIEDR---LQTLEEEKE 208
            ..       |..:|.:|.|.||....:.:..:  |..:.|.   :|.:|.|:|
  Fly   135 SQDTAPATIECTQEDVNKLLETQFSTDVLIRHAELAPVPDTAGFIQKVERERE 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC3NP_523374.2 SMC_N 2..1180 CDD:280601 28/118 (24%)
ABC_SMC3_euk 3..>159 CDD:213239 13/55 (24%)
SMC_hinge 533..643 CDD:214944
TMPIT 678..>760 CDD:285135
CHD5 <780..>822 CDD:282299
P-loop_NTPase <1088..1182 CDD:304359
EMC10NP_730662.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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