Protein Alignment SMC3 and Ckap4

DIOPT Version :9

• Sequence 1: NP_523374.2
• Gene: SMC3 / 32627
• FlyBaseID: FBgn0015615
• Length: 1200
• Species: Drosophila melanogaster
• Sequence 2: NP_001102210.1
• Gene: Ckap4 / 362859
• RGDID: 1311989
• Length: 326
• Species: Rattus norvegicus
• Alignment Length: 365
• Identity: 71/365 - (19%)
• Similarity: 158/365 - (43%)
• Gaps: 76/365 - (20%)

  Fly   679 MQKKRTEYTSQIAEFEKKLSKLRNELKSTENNINSIVSEMQKTETKQGKSKDVFEKVQGEIRLMK 743
            :::.:.:.:..:...::.:.:::..:||.|.:|.::.|.:|..|:      ||:.:|:
  Rat     6 LEESKGDRSQDVKVLKEAVKEVQASMKSRERDIEALKSSLQTMES------DVYTEVR------- 57

  Fly   744 EELVRIEQYRAPKERSLAQCKASLESMTSTKSSLEAELKQELMSTLSSQDQREIDQLNDDIRRLN 808
             |||.::|          :.:|..::..|.:.:|:| |.::|:     |.:....:|.:|||||.
  Rat    58 -ELVSLKQ----------EQQAFKQAADSERLALQA-LTEKLL-----QSEESSSRLPEDIRRLE 105

  Fly   809 QENKEAFTQRMQFEVRKNKLDNLLINNLFRRRDELIQALQEIS-----VEDRKRKLNNCKTELVS 868
            :|       ..|.:|..:..:..::....:..|||.:.::.:.     |||   .:.:.:....|
  Rat   106 EE-------LQQLKVGAHGSEEAVVFRDSKAFDELQKQMEGLGARLQYVED---GVYSMQVASAS 160

  Fly   869 AEKRIKKVNSDLEEIEKRVMEAVQLQKELQ-----QELETHVRKEKEAEENLNKDSKQLEKW--- 925
            ..:.::.:.|..:|.|:|:   ..||:.::     .:|.:.||..:|.:..|:.|.|.|::.
  Rat   161 HTESLESLLSKSQEYEQRL---AMLQEHVESLGPISDLASTVRSLEETQLALSSDLKGLKQGLGE 222

  Fly   926 --STKENMLNEKIDECTEKIASLGAVPLVDPSYTRMSLKNIFKELEKANQHLKKYNHVNKKALDQ 988
              .|.|::..:.....::..|....:|..|......||.|:...:.:....||    :.:.|:|.
  Rat   223 LPGTVESLQEQVHLLLSQDPAQAAGLPPQDFLDRLSSLDNLKSSVSQVESDLK----MLRTAVDS 283

  Fly   989 FLSFS-----------EQKEKLYRRKEELD---IGDQKIH 1014
            .:::|           ..|..|...:.:||   :..:|||
  Rat   284 LVAYSVKIETNENSLESAKGLLDDLRNDLDRLFVKVEKIH 323

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SMC3	NP_523374.2	SMC_N	2..1180	CDD:280601	71/365 (19%)
		ABC_SMC3_euk	3..>159	CDD:213239
		SMC_hinge	533..643	CDD:214944
		TMPIT	678..>760	CDD:285135	14/80 (18%)
		CHD5	<780..>822	CDD:282299	11/41 (27%)
		P-loop_NTPase	<1088..1182	CDD:304359
Ckap4	NP_001102210.1	SMC_prok_B	<2..>272	CDD:274008	59/308 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166350701
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.930