DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SMC3 and SMC5

DIOPT Version :9

Sequence 1:NP_523374.2 Gene:SMC3 / 32627 FlyBaseID:FBgn0015615 Length:1200 Species:Drosophila melanogaster
Sequence 2:NP_996141.2 Gene:SMC5 / 326215 FlyBaseID:FBgn0052438 Length:1034 Species:Drosophila melanogaster


Alignment Length:1280 Identity:257/1280 - (20%)
Similarity:477/1280 - (37%) Gaps:370/1280 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 IKQIIIQGFKSYKDQTVVEPFDKRH--NVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQRQSLL 65
            |..:..:.|.||.:.|    |..:|  ||:.|.||||||....||...|..|...|   .|.:.:
  Fly    16 IHSVYCKDFVSYSEIT----FHPKHYLNVLTGPNGSGKSTIVSAIILGLGGEPILL---DRSASV 73

  Fly    66 HEGTGARVISAYVEI-IFDNSDNRVPIDKEEIFLRRVIGAK-KDQYFLNKKVVPRNEVVNLLESA 128
            .:...:...||.:.: ::..:.|..     |.| ||:|.:. ...:.:|.|...:...:..:.|.
  Fly    74 ADYIQSNKTSATIIVRVYGRTPNTT-----ETF-RRIINSNGLSTFSVNDKDTSKKNFLAAVSSF 132

  Fly   129 GFSSSNPYYIVKQGKINQMATAADSYRLKLLREVAGTRVYDERKEESLNLLRETDSKVEKISEYL 193
            ....||....:.|.::...:.....   :||.....: |.||....|.|.|::  .:.|:.:.:.
  Fly   133 NIQVSNLCQFLPQDRVQDFSKMNPQ---ELLLNTMSS-VCDEDLINSFNSLKQ--MRTEQANVHA 191

  Fly   194 KTIEDRLQTLEEEKEELKEYQKWDKTRRTLEYIRYE-TELKDTKKALDELQLQRKSSSDKKKIYN 257
            ..        |:||.:|.:.||      .||:::.. ::.|:.::...:||:.     ..||:: 
  Fly   192 NR--------EKEKSDLVKKQK------RLEHLQMTVSQYKEREEVKQKLQVY-----SAKKLW- 236

  Fly   258 IEIQKAQEKIKDVQKNLKEAKKKVQSTKEERSVLMTEQQQLLREKTKLDLTIVDLNDEVQGDNKS 322
            :|.|..:.|..:::..:|.||.:....|.:...|:..|:|:.:||..|...:::....::.....
  Fly   237 VETQAGEAKAAEMKTQVKNAKTQSDKLKNQHDKLLQSQEQIEKEKESLRKALLEKTRLLENAVAE 301

  Fly   323 KERADQELKNLKVTIAEREKELDDVKPKYEAMKRKEEDCSRELQLKEQKRKELYAKQGRGSQFSS 387
            |...|.::.:||..|.:::.||:.   ..:..:|...:|....||.|.|   :|           
  Fly   302 KAAIDGKMDSLKQGIYQKKYELEQ---NIKKSRRTATECDNLNQLVENK---IY----------- 349

  Fly   388 REDRDKWITNELKSISKQTRDKIAHHAKLVEDLKKDATSEKDLGQKIEEHSSELEQLRLQIDEHN 452
                      ||::::| :|..|...   :|..|:...:.:  |:.:|::|.     |.|:::  
  Fly   350 ----------ELETLNK-SRPLIVSE---LERAKESCAAAR--GKAMEQYSR-----RRQLEQ-- 391

  Fly   453 KKYYELKKTKDQHQSMRNELWRKETQMTQQLQTHKEELSRADQALRSMAGKPILNGCDSVRKVLD 517
                   |..|              :|..::..:|.::.|    ||::..:.|    |.:|....
  Fly   392 -------KLND--------------EMIPEITAYKLKIER----LRNVKMQKI----DEIRAKNP 427

  Fly   518 SFVERGGQSAEIARAY----YGPVI-----ENFSCDKTIYTAVEVTAANRLFHHIVESEYEGTQI 573
            :.|......|:..:.|    |.|:|     :|....|.:   ..|.|...||....|.:.:.:.:
  Fly   428 NLVVAMNWLAQNKQRYKLNVYDPMILELTVQNHEDAKFL---ENVVAQRDLFAFACEDKGDMSDL 489

  Fly   574 LKEM-NKLKLPGEVTF-MPLNRLQVKIHDYPDDPDS--------------IPMISKL-------- 614
            :.|: .|.||...|.: .|.:||........||..|              ||:|:||        
  Fly   490 INELCVKQKLGVNVIYCAPSDRLVYSPKTPIDDLRSFGFRSYLVDLVTGPIPLINKLCASYSIHN 554

  Fly   615 ---------KYDEQHDKALRYIFG---KTLICRNLERATELAKSTGL----DCVTLDGDQ----- 658
                     .|.....||:|..||   |.::..:..|:..:...:.:    ..:|:|..|     
  Fly   555 IPIGTEAVGNYTSSIPKAIRVYFGGSKKFVVTASRYRSDTILTESSIRAKNQLITVDSQQLALVM 619

  Fly   659 ------VSSKGSLTGGYFNTSR--SRLEM-----QKKRTEYTSQIAEF----------EKKLSKL 700
                  |....|:......|..  .||:.     |:||.:...:||.|          :|||..|
  Fly   620 KQCSEAVKESDSIKNAITQTDNEFERLQAVAKDEQEKRRKLDQKIAHFNSLKTEIETLQKKLEAL 684

  Fly   701 RN--ELKSTENNI-NSIVSEMQKTETKQGKSKDVFEKVQGEIRLMKEELVRIEQYRAPKERSLAQ 762
            ||  .|...|.|. ||:..:::|          :|:                      .:..|..
  Fly   685 RNSDSLDCLETNFCNSLHKDLKK----------IFD----------------------ADAELCS 717

  Fly   763 CKASLESMTSTKSSLEAELKQELMSTLSSQDQREIDQLNDDIRRLNQENKEAFTQRMQFEVRKNK 827
            |..:::.:.     :|..:.|..:|....|.:.:|:.|.:     ::|..:|.|:..|       
  Fly   718 CLKAIDRLI-----IEKNMAQTKVSIYMLQHETQIEALKE-----SEEQSKAATRDFQ------- 765

  Fly   828 LDNLLINNLFRRRDELIQALQ-EIS-VEDRKRKLNN-CKTELVSAEK-RIKKVNSDLEEIE-KRV 887
                          :|:|.|: :|| |..||..:.. |..|:.::.| ..||...:||.|: ..:
  Fly   766 --------------QLLQCLENQISDVNKRKSAIQGLCHGEIPTSSKFPFKKEFRELENIDLPEL 816

  Fly   888 MEAVQLQKELQQELETHVRKEKEAEENLNKDSKQLEKWSTKENMLNEKIDECTEKIASLGAVPLV 952
            .||:.   :.|..|                                    ||.:.:.|...    
  Fly   817 REAIH---DFQARL------------------------------------ECMKSVNSEAI---- 838

  Fly   953 DPSYTRMSLKNIFKELEKANQHLKKYNHVNKKALDQFLSFSEQKEKLYRRKEELDIGDQKIHMLI 1017
             .||  ..|:|..|:||:..|          ::::|..|.......||      |..:.|::.|:
  Fly   839 -SSY--QGLQNEVKQLEEGIQ----------ESVNQAKSIESGMSNLY------DKWEPKLNSLV 884

  Fly  1018 QSLE---MQKVEAIQFTFRQVAQNFTKVFKKLVPMGAGFLILKTKDNEGDEMEKEVENSDAFTGI 1079
            :::.   .:.:|:|::                    .|.::|...|.         .:.|:: ||
  Fly   885 ETISTKFSEFMESIEY--------------------VGEVVLSKTDK---------YDFDSY-GI 919

  Fly  1080 GIRVSF-TGVEAEMREMNQLSGGQKSLVALALIFSIQKCDPAPFYLFDEIDQALDAMHRKAVANM 1143
            .|.|.| .|::.:..:....|||::::.......|:|.....||...|||:|.:||.:.:.:.::
  Fly   920 QIMVQFRRGLQLQPLDKFIQSGGERAVSIAIYSLSLQHVTHVPFRCVDEINQGMDATNERHIFDL 984

  Fly  1144 IHELS---DTAQFITTTFRPELLE----NAHKFYGVRFRNK-VSH 1180
            :.:.:   .:||::..|  |:||.    |.|....:...:| |.|
  Fly   985 LLKEATKHGSAQYLFVT--PKLLRDLNYNEHLCVSIVHNSKTVCH 1027

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC3NP_523374.2 SMC_N 2..1180 CDD:280601 256/1278 (20%)
ABC_SMC3_euk 3..>159 CDD:213239 36/159 (23%)
SMC_hinge 533..643 CDD:214944 35/154 (23%)
TMPIT 678..>760 CDD:285135 19/99 (19%)
CHD5 <780..>822 CDD:282299 9/41 (22%)
P-loop_NTPase <1088..1182 CDD:304359 24/101 (24%)
SMC5NP_996141.2 ABC_SMC5_euk 14..>160 CDD:213244 36/159 (23%)
Smc 22..1011 CDD:224117 251/1256 (20%)
GrpE 212..>316 CDD:295646 22/109 (20%)
ABC_SMC5_euk <919..1025 CDD:213244 27/107 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.