Sequence 1: | NP_523374.2 | Gene: | SMC3 / 32627 | FlyBaseID: | FBgn0015615 | Length: | 1200 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_996141.2 | Gene: | SMC5 / 326215 | FlyBaseID: | FBgn0052438 | Length: | 1034 | Species: | Drosophila melanogaster |
Alignment Length: | 1280 | Identity: | 257/1280 - (20%) |
---|---|---|---|
Similarity: | 477/1280 - (37%) | Gaps: | 370/1280 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 3 IKQIIIQGFKSYKDQTVVEPFDKRH--NVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQRQSLL 65
Fly 66 HEGTGARVISAYVEI-IFDNSDNRVPIDKEEIFLRRVIGAK-KDQYFLNKKVVPRNEVVNLLESA 128
Fly 129 GFSSSNPYYIVKQGKINQMATAADSYRLKLLREVAGTRVYDERKEESLNLLRETDSKVEKISEYL 193
Fly 194 KTIEDRLQTLEEEKEELKEYQKWDKTRRTLEYIRYE-TELKDTKKALDELQLQRKSSSDKKKIYN 257
Fly 258 IEIQKAQEKIKDVQKNLKEAKKKVQSTKEERSVLMTEQQQLLREKTKLDLTIVDLNDEVQGDNKS 322
Fly 323 KERADQELKNLKVTIAEREKELDDVKPKYEAMKRKEEDCSRELQLKEQKRKELYAKQGRGSQFSS 387
Fly 388 REDRDKWITNELKSISKQTRDKIAHHAKLVEDLKKDATSEKDLGQKIEEHSSELEQLRLQIDEHN 452
Fly 453 KKYYELKKTKDQHQSMRNELWRKETQMTQQLQTHKEELSRADQALRSMAGKPILNGCDSVRKVLD 517
Fly 518 SFVERGGQSAEIARAY----YGPVI-----ENFSCDKTIYTAVEVTAANRLFHHIVESEYEGTQI 573
Fly 574 LKEM-NKLKLPGEVTF-MPLNRLQVKIHDYPDDPDS--------------IPMISKL-------- 614
Fly 615 ---------KYDEQHDKALRYIFG---KTLICRNLERATELAKSTGL----DCVTLDGDQ----- 658
Fly 659 ------VSSKGSLTGGYFNTSR--SRLEM-----QKKRTEYTSQIAEF----------EKKLSKL 700
Fly 701 RN--ELKSTENNI-NSIVSEMQKTETKQGKSKDVFEKVQGEIRLMKEELVRIEQYRAPKERSLAQ 762
Fly 763 CKASLESMTSTKSSLEAELKQELMSTLSSQDQREIDQLNDDIRRLNQENKEAFTQRMQFEVRKNK 827
Fly 828 LDNLLINNLFRRRDELIQALQ-EIS-VEDRKRKLNN-CKTELVSAEK-RIKKVNSDLEEIE-KRV 887
Fly 888 MEAVQLQKELQQELETHVRKEKEAEENLNKDSKQLEKWSTKENMLNEKIDECTEKIASLGAVPLV 952
Fly 953 DPSYTRMSLKNIFKELEKANQHLKKYNHVNKKALDQFLSFSEQKEKLYRRKEELDIGDQKIHMLI 1017
Fly 1018 QSLE---MQKVEAIQFTFRQVAQNFTKVFKKLVPMGAGFLILKTKDNEGDEMEKEVENSDAFTGI 1079
Fly 1080 GIRVSF-TGVEAEMREMNQLSGGQKSLVALALIFSIQKCDPAPFYLFDEIDQALDAMHRKAVANM 1143
Fly 1144 IHELS---DTAQFITTTFRPELLE----NAHKFYGVRFRNK-VSH 1180 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SMC3 | NP_523374.2 | SMC_N | 2..1180 | CDD:280601 | 256/1278 (20%) |
ABC_SMC3_euk | 3..>159 | CDD:213239 | 36/159 (23%) | ||
SMC_hinge | 533..643 | CDD:214944 | 35/154 (23%) | ||
TMPIT | 678..>760 | CDD:285135 | 19/99 (19%) | ||
CHD5 | <780..>822 | CDD:282299 | 9/41 (22%) | ||
P-loop_NTPase | <1088..1182 | CDD:304359 | 24/101 (24%) | ||
SMC5 | NP_996141.2 | ABC_SMC5_euk | 14..>160 | CDD:213244 | 36/159 (23%) |
Smc | 22..1011 | CDD:224117 | 251/1256 (20%) | ||
GrpE | 212..>316 | CDD:295646 | 22/109 (20%) | ||
ABC_SMC5_euk | <919..1025 | CDD:213244 | 27/107 (25%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG1196 | |
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.900 |