Sequence 1: | NP_523374.2 | Gene: | SMC3 / 32627 | FlyBaseID: | FBgn0015615 | Length: | 1200 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_683515.4 | Gene: | SMC1B / 27127 | HGNCID: | 11112 | Length: | 1235 | Species: | Homo sapiens |
Alignment Length: | 1330 | Identity: | 304/1330 - (22%) |
---|---|---|---|
Similarity: | 565/1330 - (42%) | Gaps: | 292/1330 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 2 HIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQRQSLLH 66
Fly 67 EGTGARV-----ISAYVEIIFDNSDNRVPIDKEEIFLRRVIGAKKDQYFLNKKVVPRNEVVNLLE 126
Fly 127 SAGFSSSNPYYIVKQGKINQMATAADSYRLKLLREV--AGTRV--YDERKEESLNLLRETDSKVE 187
Fly 188 KISEYLKTIEDRLQTLEEEKEELKEYQKWDKTRRTLEYIRYETELKDTKKALDELQLQRKSSSDK 252
Fly 253 KKIY--NIEIQKAQEKIKDVQKNLKEAKKKVQSTKEERSVLMTEQQQLLREKTKLDLTIVD--LN 313
Fly 314 DEVQGDNKSKERADQELKNL---KVTIAEREKEL----DDVKPKYEAMKRKEEDC-----SRELQ 366
Fly 367 LKEQ---KRKELYAKQGRGSQFSSREDRDKWITNELKSISKQTRDKIAHHAKLVEDLK-KDATSE 427
Fly 428 KDLGQKIEEH---SSELEQLRLQIDEHNKKYYE-----------LKKTKDQHQSMRNELWRKETQ 478
Fly 479 MT---QQLQTHKEELSRADQALRSMAGKPILNGCDSVRKVLDSFVERGGQSAEI----ARAY--- 533
Fly 534 -YG-------PVIENFSCDKTIYTAVEVTAANRLFHHIVESEYEGTQILKEMNKLKLPGEVTFMP 590
Fly 591 LNRLQVK-IHDYPDDPDSIPM---ISKLKYDEQHDKALRYIFGKTLICRNLERATELAKSTGLD- 650
Fly 651 --CVTLDGDQVSSKGSLTGG-----YFNTSRSRLEMQKKRTEYTSQIAEFEKKLSKLRNELKSTE 708
Fly 709 NNINSIVSEMQKTETKQGKSKDVFEKVQGEIRLMKEELVRIEQYRAPKERSL----AQCKASLES 769
Fly 770 MTSTKSSLEAELKQELMSTLSSQDQREIDQLNDDI-----RRLNQEN------------KEAFTQ 817
Fly 818 RMQFEVRKNKLDNLL-------------INNLFRRRDELIQALQEISVEDRKRKLNNC---KTEL 866
Fly 867 VSAEKRIK-----------KVNSDLEEIEKRVM----EAVQLQKELQQELETHVRKEKEAEENLN 916
Fly 917 KDSKQLEKWSTKENMLNEKIDEC------TEKIASLGAVPLVDP------SYTRMSLKNIFKELE 969
Fly 970 KANQ---HLK--------------KYNHVNKKALDQFLS----FSEQKEKLYRRKEELDIGDQKI 1013
Fly 1014 HMLIQSLEMQKVEAIQFTFRQVAQNFTKVFKKLVPMGAGFLILKTKDNEGDEMEKEVENSDAFTG 1078
Fly 1079 IGIRVSFTGVEAEMREMNQLSGGQKSLVALALIFSIQKCDPAPFYLFDEIDQALDAMHRKAVANM 1143
Fly 1144 IHE-LSDTAQFITTTFRPELLENAHKFYGV 1172 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SMC3 | NP_523374.2 | SMC_N | 2..1180 | CDD:280601 | 304/1330 (23%) |
ABC_SMC3_euk | 3..>159 | CDD:213239 | 45/160 (28%) | ||
SMC_hinge | 533..643 | CDD:214944 | 25/124 (20%) | ||
TMPIT | 678..>760 | CDD:285135 | 17/81 (21%) | ||
CHD5 | <780..>822 | CDD:282299 | 10/58 (17%) | ||
P-loop_NTPase | <1088..1182 | CDD:304359 | 30/86 (35%) | ||
SMC1B | NP_683515.4 | Smc | 3..1219 | CDD:224117 | 304/1330 (23%) |
ABC_SMC1_euk | 4..>148 | CDD:213242 | 44/153 (29%) | ||
DUF342 | <421..492 | CDD:302792 | 16/72 (22%) | ||
SMC_hinge | 513..628 | CDD:214944 | 24/122 (20%) | ||
ABC_SMC1_euk | <1113..1216 | CDD:213242 | 30/87 (34%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C165156779 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG1196 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.740 |