DRSC/TRiP Functional Genomics Resources

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Protein Alignment SMC3 and Ckap4

DIOPT Version :9

Sequence 1:NP_523374.2 Gene:SMC3 / 32627 FlyBaseID:FBgn0015615 Length:1200 Species:Drosophila melanogaster
Sequence 2:NP_780660.1 Gene:Ckap4 / 216197 MGIID:2444926 Length:575 Species:Mus musculus


Alignment Length:649 Identity:129/649 - (19%)
Similarity:252/649 - (38%) Gaps:201/649 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 VNLLESAGFSSSNPYYIVKQGKINQMATAADSY----------------RLKLLREVAGT----- 165
            ::|:.:|.||....::::::  :.|:......:                :::.|:...||     
Mouse    93 LSLVAAAAFSGWYVHHVLEE--VQQVRRGHQDFSRQRDELGQGLQGVEQKVQSLQATFGTFESLL 155

  Fly   166 RVYDERKEESLNLLRETDSKVEKISEYLKTIEDR-LQTLEEEKEELKEYQKWDKTRRTLEYIRYE 229
            |....:::.:...::|.:|::.:|||.|:.:::. |:.|.:....:|:.::.|           .
Mouse   156 RNSQHKQDLTEKAVKEGESELNRISEVLQKLQNEILKDLSDGIHVVKDARERD-----------F 209

  Fly   230 TELKDT-KKALDELQLQRKSSSDKKKIYNIEIQKAQEKIKDVQKNLKEAKKKVQSTKEERSVLMT 293
            |.|::| ::.|.||   .||.:|...|:. ::||..      ||.:.|.|.||.|.:|.:.    
Mouse   210 TSLENTVEERLTEL---TKSINDNIAIFT-DVQKRS------QKEINEVKMKVASLEESKG---- 260

  Fly   294 EQQQLLREKTKLDLTIVDLNDEVQGDNKSKERADQELKN----LKVTIAEREKELDDVKPKYEAM 354
            ::.|.::       |:.|...|||....|:||..:.||:    ::..:....:||..:|.:.:|.
Mouse   261 DRSQDVK-------TLKDAVKEVQASMMSRERDIEALKSSLQTMESDVYTEVRELVSLKQEQQAF 318

  Fly   355 KRKEEDCSRELQLKEQKRKELYAKQGRGSQFSSREDRD-KWITNELKSISKQTRDKIAHHAKLVE 418
            |:..:  |..|.|:....|.|     |..:.|||...| :.:..||:.:      |:..|.....
Mouse   319 KQAAD--SERLALQALTEKLL-----RSEESSSRLPEDIRRLEEELQQL------KVGAHGSEEG 370

  Fly   419 DLKKDATSEKDLGQKIEEHSSELEQLRLQIDEHNKKYYELKKTKDQHQSMRNELWRKETQMTQQL 483
            .:.||:.:.::|.::||...:     |||..|..  .|.::....:|......|..|..:..|:|
Mouse   371 AVFKDSKALEELQRQIEGLGA-----RLQYVEDG--VYSMQVASARHTESLESLLSKSQEYEQRL 428

  Fly   484 QTHKEELSRADQALRSMAGKPILNGCDSVRKVLDSFVERGGQSAEIARAYYGPVIENFSCDKTIY 548
                                          .:|...|...|.|:::|              .|:.
Mouse   429 ------------------------------AMLQEHVGNLGSSSDLA--------------STVR 449

  Fly   549 TAVEVTAANRLFHHIVESEYEGTQILKEMNKL--KLPGEVTFMPLNRLQVKIHDYPDDPDSIPMI 611
            :..|...|       :.|:      |||:.:.  :|||.|     ..||.::            :
Mouse   450 SLGETQLA-------LSSD------LKELKQSLGELPGTV-----ESLQEQV------------L 484

  Fly   612 SKLKYDEQHDKALRYIFGKTLICRNLERATELAKSTGL---DCVTLDGDQVSSKGSLTGGYFNTS 673
            |.|..|:                         |::.||   |.:    |::||..:|     .:|
Mouse   485 SLLSQDQ-------------------------AQAEGLPPQDFL----DRLSSLDNL-----KSS 515

  Fly   674 RSRLEMQKK--RTEYTSQIAEFEKKLSKLRNELKSTENNINSIVSEMQKTETKQGKSKDVFEKV 735
            .|::|...|  ||...|.:| :..|:....|.|:|.:..::.:.:::.:...|..|   :.||:
Mouse   516 VSQVESDLKMLRTAVDSLVA-YSVKIETNENNLESAKGLLDDLRNDLDRLFLKVEK---IHEKI 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC3NP_523374.2 SMC_N 2..1180 CDD:280601 129/649 (20%)
ABC_SMC3_euk 3..>159 CDD:213239 5/52 (10%)
SMC_hinge 533..643 CDD:214944 16/111 (14%)
TMPIT 678..>760 CDD:285135 14/60 (23%)
CHD5 <780..>822 CDD:282299
P-loop_NTPase <1088..1182 CDD:304359
Ckap4NP_780660.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..73
Smc <152..433 CDD:224117 77/362 (21%)
alaS <464..533 CDD:273026 24/119 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847187
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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