Sequence 1: | NP_523374.2 | Gene: | SMC3 / 32627 | FlyBaseID: | FBgn0015615 | Length: | 1200 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_775360.2 | Gene: | smc4 / 192332 | ZFINID: | ZDB-GENE-020419-21 | Length: | 1289 | Species: | Danio rerio |
Alignment Length: | 1317 | Identity: | 314/1317 - (23%) |
---|---|---|---|
Similarity: | 573/1317 - (43%) | Gaps: | 282/1317 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 3 IKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQRQSLLHE 67
Fly 68 GTG-ARVISAYVEIIFDNSDNRVPIDKE----------EIFLRRVIGAKKDQ---YFLNKKVVPR 118
Fly 119 NEVVNLLESAGFSSSNPYYIVKQGKINQMA-------TAADSYRLKLLREVAGTRVYDERKEESL 176
Fly 177 NLL-RETDSKVEKISEYL---KTIEDRLQTLEEEKEELKEYQKWD----KTRRTLEY-----IRY 228
Fly 229 ETELKDTKKALDELQLQRKSSSDKKKIYNIEIQKAQEKIKDVQKNLKEAKKKVQSTKEERSVLMT 293
Fly 294 EQQQLLREKTKLDLTIVDLNDEVQGDNKSKER-------ADQE-LKNLKVTIAEREKELDDVKPK 350
Fly 351 YEAMKRKEEDCSRELQLKEQKRKEL---YAKQGRGSQFSSREDRDKWITNELKSISK---QTRDK 409
Fly 410 IAHHAKLVEDLKKDATSEKDLGQKIEEHSSELEQLRLQIDEHNKKYYELKKTKDQHQSMRNELWR 474
Fly 475 KETQM---TQQLQTHK-----EELSRADQALRSMAG---------KPILNGCDSVRKVLDSFVE- 521
Fly 522 -RGGQSAEIARAYYGPVIENFSCDKTIYTAVEVT--AANRLFHHIVESEYEGTQILKEMNKLKLP 583
Fly 584 GEVTFMPLNRLQV--KIHDYPDDPDSIPMI---SKLKYDEQHDKALRYIFGKTLICRNLERATEL 643
Fly 644 A--KSTGLDCVTLDGDQVSSKGSLTGGYFNTSRSRLEMQKKRTEYTSQIAEFEKKLSKLRNELKS 706
Fly 707 TENNINSIVSEMQKTETKQGKSKDVFEKVQGEIRLMKEELVRIEQYRAPKERSLAQCKASLESMT 771
Fly 772 STKSSLEAELKQ-ELMSTLSSQDQREIDQLNDDIRRLNQENKEAFTQRMQFEVRKNKLDNLLI-- 833
Fly 834 --NNLFRRRDELIQALQEISVEDRKRKLNNCKTELVSAEKRIK--------------KVNSDLEE 882
Fly 883 IEKRVMEAVQLQKELQQELETHVRKEKEAEENLNKDSKQ-----------------LEKWSTKEN 930
Fly 931 MLNEKID----ECTEKI-----------------ASLGAVPLVDPSYTR-----MSLKNIFKELE 969
Fly 970 KANQHLKKYNHVNKKALDQFLSFSEQKEKLY-RRKEELDIGDQKIHMLIQSLEMQKVEAIQFTFR 1033
Fly 1034 QVAQNFTKVFKKLVPMGAGFLIL--KTKDNE-----GDEMEKE-VENSDAFTGIGIRVSFTGVEA 1090
Fly 1091 EMREMNQLSGGQKSLVALALIFSIQKCDPAPFYLFDEIDQALDAMHRKAVANMIHELSDTAQFIT 1155
Fly 1156 TTFRPELLENAHKFYGV 1172 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SMC3 | NP_523374.2 | SMC_N | 2..1180 | CDD:280601 | 314/1317 (24%) |
ABC_SMC3_euk | 3..>159 | CDD:213239 | 51/176 (29%) | ||
SMC_hinge | 533..643 | CDD:214944 | 24/116 (21%) | ||
TMPIT | 678..>760 | CDD:285135 | 15/81 (19%) | ||
CHD5 | <780..>822 | CDD:282299 | 5/42 (12%) | ||
P-loop_NTPase | <1088..1182 | CDD:304359 | 32/85 (38%) | ||
smc4 | NP_775360.2 | ABC_SMC4_euk | 81..>240 | CDD:213241 | 48/163 (29%) |
SMC_N | 82..1273 | CDD:280601 | 314/1317 (24%) | ||
DUF4349 | <274..435 | CDD:305044 | 42/177 (24%) | ||
SMC_hinge | 612..726 | CDD:214944 | 25/122 (20%) | ||
MIT_CorA-like | <866..1025 | CDD:294313 | 30/167 (18%) | ||
ABC_SMC4_euk | <1180..1274 | CDD:213241 | 32/85 (38%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG1196 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |