DRSC/TRiP Functional Genomics Resources

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Protein Alignment SMC3 and C44C10.5

DIOPT Version :9

Sequence 1:NP_523374.2 Gene:SMC3 / 32627 FlyBaseID:FBgn0015615 Length:1200 Species:Drosophila melanogaster
Sequence 2:NP_001359562.1 Gene:C44C10.5 / 183454 WormBaseID:WBGene00008086 Length:277 Species:Caenorhabditis elegans


Alignment Length:367 Identity:71/367 - (19%)
Similarity:143/367 - (38%) Gaps:111/367 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   274 LKEAKKKVQSTKEERSVLMTEQQQLLREKTKLDLTIVDLNDEVQGDNKSKERADQELKNLKVTIA 338
            ::|:|:||:...:.:.::..||.|.:    .|.|..:.||             |.|.|:|:..:.
 Worm     2 IEESKQKVEKHTKMKELIQVEQGQFI----SLHLYRLFLN-------------DLERKSLEKKLT 49

  Fly   339 EREKELDDVKPKYEAMKRKEEDCSRELQLKEQKRKELYAKQGRGSQFS----SREDRDKWITNEL 399
            :.:.:|.::|...::.|..:.|..:.:           |||...:.|.    ||.|.|       
 Worm    50 KEQVKLTNIKASKQSQKVTKSDDPKAI-----------AKQAPPAMFKVQGCSRLDGD------- 96

  Fly   400 KSISKQTRDKIAHHAKLVEDLKKDATSEKDLGQKIEEHSSELEQLRLQIDEHNKKYYELKKTKDQ 464
             |:|::..:|.|    :|.:|:.....::...:||..:.: |:.|.:...|.....|::   |..
 Worm    97 -SLSQENAEKPA----IVIELENRLVQQRAQRRKIIANVT-LQDLDIPAKEAGTFSYDV---KPD 152

  Fly   465 HQSMRNELWRKETQMTQQLQTHKEELSRADQALRS--MAGKPILNGCD--SVRKVL------DSF 519
            :.|:.:|| :||:...:.::.|...|....||.|:  :|    :||.:  .:..:|      |||
 Worm   153 YSSLPDEL-KKESNDAETVKMHLRTLEETIQATRNEWVA----VNGAEYPDMSNILIRFHETDSF 212

  Fly   520 VERGGQSAEIARAYYGPVIENFSCDKT--IYTAVEVTAANRLFH---HIVESEYEGTQILKEMNK 579
            :                   |.:..:|  :...:|...|:|..|   .:.......::|.:|:: 
 Worm   213 I-------------------NIAKLRTTELEAEIEQVKASRRTHFNQRLAAVSSSVSRIYREIS- 257

  Fly   580 LKLPGEVTFMPLNRLQVKIHDYPDDPDSIPMISKLKYDEQHD 621
                                   :||||...::....||.::
 Worm   258 -----------------------EDPDSTVSLASSNEDEPYE 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC3NP_523374.2 SMC_N 2..1180 CDD:280601 71/367 (19%)
ABC_SMC3_euk 3..>159 CDD:213239
SMC_hinge 533..643 CDD:214944 14/94 (15%)
TMPIT 678..>760 CDD:285135
CHD5 <780..>822 CDD:282299
P-loop_NTPase <1088..1182 CDD:304359
C44C10.5NP_001359562.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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