Sequence 1: | NP_523374.2 | Gene: | SMC3 / 32627 | FlyBaseID: | FBgn0015615 | Length: | 1200 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_497935.1 | Gene: | smc-4 / 175603 | WormBaseID: | WBGene00004874 | Length: | 1549 | Species: | Caenorhabditis elegans |
Alignment Length: | 1402 | Identity: | 288/1402 - (20%) |
---|---|---|---|
Similarity: | 547/1402 - (39%) | Gaps: | 341/1402 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 3 IKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQRQSLLHE 67
Fly 68 GTGARVISAYVEIIFDN-----SDNRVPIDKEEIFLRRVIGAKKDQYFLNKKVVPRNEVVNLLES 127
Fly 128 AGFSSSNPYYIVKQGKINQMA-------TAADSYRLKLLREVAGTRVYDERKEESLNLLRETDSK 185
Fly 186 VEKISEYLKTIEDRLQTLEEEKEELKEYQKWDKTRRTLEYIRYETELKDTKKALDELQLQRKSSS 250
Fly 251 DKKKIYNIEIQKAQEKIKDVQKNLKEAKKKVQSTKEERSVLMTEQQQLLREKTKLDLTIVDLNDE 315
Fly 316 VQGDNKSKERADQELKNLKVTIAEREKEL---DDVKPKYEAMKRKEEDCSRELQL---------- 367
Fly 368 ----------------KEQKRK--ELYAKQG------RGSQFSSREDRDKWITNELKSISKQTRD 408
Fly 409 KIAHHAKLVEDLKKDATSEKD-----------LGQKIEEHSSELEQLRLQIDEHNKKYYELKKTK 462
Fly 463 DQHQSMR--NELWRKETQMTQQLQTHKEELSRADQALRSMAGKPILNGCDSVRKVLDSFVERGGQ 525
Fly 526 SAEIARAYYGPVIENFSCDKTIYTAVEVTAANRLFHHIVESEYEGTQILKEMNKLKLPGEVTFMP 590
Fly 591 LNRLQVKIHDYPDDP-------------DSIPMISKLKYDEQHDKALRYIFGKTLICRNLERATE 642
Fly 643 LAKSTGLDCVTLDGDQVSSKGSLTG------GYFNTSRSRLEMQKKRTEYTSQIAEFEKKLSKLR 701
Fly 702 ---NELKSTENNIN-SIVSEMQKTETKQGKSKDVFEKVQG---EIRLMKEELVRIEQYRAPKERS 759
Fly 760 LAQCKASLESMTSTKSSLEAELKQELMSTLSSQDQREIDQLNDDIRRLNQENKEAFTQRMQFEVR 824
Fly 825 KNKLDNLLINNLFRRRDELIQALQE------------ISVEDRKRKLNNCKTELVSAEKRIKKVN 877
Fly 878 SDLEEIEKRVM--EAVQLQKELQQELETHVRK-EKEAEENLNKDSK----------QLEKWS--- 926
Fly 927 --TKENMLNE--KIDECTEKIASL-------------------------GAVPLVDPSYTRMSLK 962
Fly 963 NIFKELEKANQHL------------------------------------------KKYNHVNKKA 985
Fly 986 LDQF---LSFSEQKEKLYRRKEEL-----------DIGDQKIHMLI------------QSLEMQK 1024
Fly 1025 VEAIQFTFRQVAQNFTKVFKKLVPMGAGFLILKTKDNEGDEMEKEVENSDAFTGIGIRVSFTGVE 1089
Fly 1090 AEMREMNQLSGGQKSLVALALIFSIQKCDPAPFYLFDEIDQALDAMHRKAVANMIHELSDTAQFI 1154
Fly 1155 TTTFRPELLENAHKFYGVRFRNKVSHIDCVTREEAKD 1191 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SMC3 | NP_523374.2 | SMC_N | 2..1180 | CDD:280601 | 283/1389 (20%) |
ABC_SMC3_euk | 3..>159 | CDD:213239 | 39/167 (23%) | ||
SMC_hinge | 533..643 | CDD:214944 | 24/122 (20%) | ||
TMPIT | 678..>760 | CDD:285135 | 18/88 (20%) | ||
CHD5 | <780..>822 | CDD:282299 | 7/41 (17%) | ||
P-loop_NTPase | <1088..1182 | CDD:304359 | 31/93 (33%) | ||
smc-4 | NP_497935.1 | ABC_SMC4_euk | 90..>252 | CDD:213241 | 39/159 (25%) |
SMC_N | 91..1361 | CDD:280601 | 285/1396 (20%) | ||
SMC_hinge | 618..734 | CDD:284001 | 28/136 (21%) | ||
MCP_signal | 865..1037 | CDD:304920 | 37/194 (19%) | ||
ABC_SMC4_euk | <1261..1362 | CDD:213241 | 35/106 (33%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG1196 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |