DRSC/TRiP Functional Genomics Resources

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Protein Alignment SMC3 and smc6

DIOPT Version :9

Sequence 1:NP_523374.2 Gene:SMC3 / 32627 FlyBaseID:FBgn0015615 Length:1200 Species:Drosophila melanogaster
Sequence 2:XP_031758814.1 Gene:smc6 / 100495796 -ID:- Length:1122 Species:Xenopus tropicalis


Alignment Length:1227 Identity:252/1227 - (20%)
Similarity:472/1227 - (38%) Gaps:309/1227 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 IKQIIIQGFKSYKDQTVVEPFDKRHNV--VVGRNGSGKSNFFYAIQFVLSDE--FTHLRPEQRQS 63
            |:.|.::.|..:   :::.||....||  |||.||||||....|:...|..:  ||: |....:.
 Frog    81 IESISLRNFMCH---SMLGPFRFGPNVNFVVGNNGSGKSAILTALIVGLGGKAAFTN-RGSTIKG 141

  Fly    64 LLHEGTGARVIS---------AYVEIIFDNS---DNRVPIDKEEIF-LRRVIGAKKDQYFLNKKV 115
            .:..|.....||         ||...:|.||   ..|:..:....: |:...||    ...||| 
 Frog   142 FIKGGENFAEISITLRNRGQDAYKPDVFGNSITVRQRITTEGGRTYKLKSATGA----VISNKK- 201

  Fly   116 VPRNEVVNLLESAGFSSSNPYYIVKQGKIN---QMATAADSYRLKLLREVAGTRVYDERKEESLN 177
               .|:..:|:.......||..::.|....   |....:|.|:..:    ..|::  |:.:|..:
 Frog   202 ---EELTMILDHFNIQVDNPVSVLTQEMSKLFLQSKNESDKYKFFM----KATQL--EQMKEDYS 257

  Fly   178 LLRETDSKVEKISEYLKTIEDRLQTLEE---EKEELKEYQKWDKTRRTLEYIRYETELKDTKKAL 239
            .:.||.||..   :.:|...:||..|.:   :|||            :...|   ..|.:.|..|
 Frog   258 YIMETKSKTH---DQVKIGSERLCDLRQDCIQKEE------------SFNSI---ASLGEMKMNL 304

  Fly   240 DELQLQRKSSSDKKKIYNIEIQKAQEKIKD-----------VQKNLKEAKKKVQSTKEERSVLMT 293
            |.|    |:|.....:  ||.:|..:.|:|           .::.:.|.:.||...:|:......
 Frog   305 DNL----KNSMAWALV--IEAEKQIKPIRDQIVTEEGHTVKYEQRIDECQGKVNIAEEKFRAKQE 363

  Fly   294 EQQQLLREKTKLDLTIVDLNDEVQGDNKSKERADQELKNLKVTIAEREKELDDVKPKYEAMKRKE 358
            |..::.:|..:|...::.|.|:||...||...|:.......:.:...||:.:.:..:.|.:|:::
 Frog   364 ELDKITQEAAELKPKVIALKDDVQKKRKSYNDAEASYNRQIMELKRSEKDAEQLSKRIEELKKRD 428

  Fly   359 EDCSRELQLKEQKRKELYAKQGRGSQFSSREDRDKWITNELKSISKQTRDKIAHHAKLVEDLKKD 423
            .:.|         .:|..|:|...:|.:.|                  ::::.:|         |
 Frog   429 GNAS---------EREKMARQQEIAQITER------------------KEELQNH---------D 457

  Fly   424 ATSEKDLGQKIEEHSSELEQLRLQIDEHNKKYYELKKTKDQHQSMRNELWRKETQMTQQLQTHKE 488
            .|    :.|||       :||:..|::|.:|:..::          ||    |..:.|:|:.||.
 Frog   458 IT----ISQKI-------KQLQEAIEKHKEKWIRIE----------NE----EQNVKQRLEQHKR 497

  Fly   489 EL-----SRADQALRSMAGKPILNGCDSVRKVLDSFVERGGQSAEIARAYYGPVIENFSC-DKTI 547
            :|     |:.|:..|  .||.|    .|:...:|.....|    ...:..:||:...... |:.:
 Frog   498 QLRELHESKTDRLKR--FGKNI----PSLLAAIDEAYNLG----RFRKKPFGPLGAYIHLKDQEL 552

  Fly   548 YTAVEVTAANRLFHHIVESEYEGTQILKEMNKLKLPGEVTFMPLNRLQVKIHD-------YPDDP 605
            ..|||......||....::..:...:...|:|....|....:.::.....::|       :|:.|
 Frog   553 ALAVECCLKGLLFAFCCDNHQDEGILQNIMSKQYSQGRRPQIIVSEFWNNVYDVSQRASFHPNHP 617

  Fly   606 DSI-------PMISKLKYDEQ--------HDKA-LRYIFGKTLICRNLERATELAKSTGLDCVTL 654
            ..:       |:::....|.:        .||. .|.|..|.:..||...|           .|.
 Frog   618 TVLTALEIDHPVVANCLIDMRGIETILIIKDKTEAREIMQKRVPPRNCREA-----------FTG 671

  Fly   655 DGDQVSSKGSLTGGYFNTSRSRLEMQKKRTEYTSQIAEFEKKLSKLRNELKSTENNINSIVSEMQ 719
            :||||     .|..|:::...|..:..:..|  ::|:..|::|.....::.:.:.:::|:..:::
 Frog   672 EGDQV-----YTNRYYSSDTRRATLLSRDVE--AEISHLEEELRDFGGQVATLQQSVHSVDKDIK 729

  Fly   720 KTETKQGKSKDVFEKVQGEIRLMKEELVRIEQYRAPKERSLAQCKASLESMTSTKSSLEAELKQE 784
            :.|....|..:..:::|.|:|.:.|::..:|.........:    |:||...:..:.:...:|||
 Frog   730 ENEDNLRKYYNSKKQIQTELRTLSEQIAELENVEEQPSTDI----ATLEKEAAENTEIIELVKQE 790

  Fly   785 LMSTLSSQDQREIDQLNDDIRRLNQENKEAFTQRMQFEVRKNKLDNLLINNLFRRRDELIQALQE 849
            :                    .|.|||                     :.||     :|:....|
 Frog   791 V--------------------ELAQEN---------------------MGNL-----KLLLTTAE 809

  Fly   850 ISVEDRKRKLNNCKTELVSAEKRIKKVNSDLEEIEKRVMEAVQLQKELQQELETHVRKEKEAEEN 914
            .:.|:.|||       ::|.....:.|..||..|::.|....:.:|....:|:.|          
 Frog   810 SNYEEIKRK-------IISVSDVAEPVKEDLHRIDQEVENCKRHKKHYVDKLKKH---------- 857

  Fly   915 LNKDSKQLEKWSTKENMLNEKIDE----CTEKIASLGAVPLVDPSYTRMSLKNIFKEL-EKANQH 974
            |::..|:.|:.:.||..|..||.:    |.|:|         :.|.|..||......| ||.|. 
 Frog   858 LDRIQKRKEEVAGKEQELEVKISQAKYICPERI---------EVSRTARSLDTEINRLREKINS- 912

  Fly   975 LKKYNHVNKKALDQFLSFSEQKEKLYRRKEELDIGDQKI-HM-----LIQSLEMQKVEAIQFTFR 1033
             ::..|.|::.:..         :.|..||.....::|| |:     |:.::..|:.|..|...|
 Frog   913 -EEVLHGNREEIIM---------QYYEAKERYQDAERKIKHLNRFITLLDTIMEQRHECFQKFQR 967

  Fly  1034 QVAQNFTKVFKKLVPM--GAGFLILKTKDNEGDEMEKEVENSDAFTGIGIRVSFTGVEAEMREMN 1096
            .:.......|..|:..  .:|.:   ..|::.:.:...|:..:            |.:||:.:|.
 Frog   968 SLTLRCKCFFNSLLSQRKHSGKI---NFDHKNETLSITVQPGE------------GNKAELSDMR 1017

  Fly  1097 QLSGGQKSLVALALIFSIQKCDPAPFYLFDEIDQALDAMHRKAVANMIHELSDTAQF 1153
            .||||::|...:..|.|:.....:||...||.|..:|.::|:...:|:.:::|:.:|
 Frog  1018 SLSGGERSFSNVCFILSLWSIAESPFRCLDEFDVYMDMVNRRISMDMMLKVADSQRF 1074

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC3NP_523374.2 SMC_N 2..1180 CDD:280601 252/1227 (21%)
ABC_SMC3_euk 3..>159 CDD:213239 44/175 (25%)
SMC_hinge 533..643 CDD:214944 24/133 (18%)
TMPIT 678..>760 CDD:285135 12/81 (15%)
CHD5 <780..>822 CDD:282299 7/41 (17%)
P-loop_NTPase <1088..1182 CDD:304359 20/66 (30%)
smc6XP_031758814.1 Smc 81..1101 CDD:224117 252/1227 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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