DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AGBE and Amy-d

DIOPT Version :9

Sequence 1:NP_788342.1 Gene:AGBE / 326264 FlyBaseID:FBgn0053138 Length:685 Species:Drosophila melanogaster
Sequence 2:NP_523768.1 Gene:Amy-d / 36932 FlyBaseID:FBgn0000078 Length:494 Species:Drosophila melanogaster


Alignment Length:554 Identity:109/554 - (19%)
Similarity:169/554 - (30%) Gaps:206/554 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 YDEFADRIVPRIKRQGYNCIQVMAIMEHAYYAS----FGYQVTSFYAASSRYGNPEQLKRMIDVA 261
            :|:.|......:...||..:||..:.|:|...|    ..||..| |...:|.||.||...|:...
  Fly    39 WDDIAAECENFLGPNGYAGVQVSPVNENAVKDSRPWWERYQPIS-YKLETRSGNEEQFASMVKRC 102

  Fly   262 HSHGLFVLLDVVHSHASKNVQDGLNQFDGTNSCFFHDGARGEHSLWDSRLFNYVEYEVLRF---- 322
            ::.|:...:|||.:|.:   .||     ||.      |..|..:...|:.:..|.|..|.|    
  Fly   103 NAVGVRTYVDVVFNHMA---ADG-----GTY------GTGGSTASPSSKSYPGVPYSSLDFNPTC 153

  Fly   323 LLSNLRWWHDEYNFD-----------GYRFDGVTSMLYHSRGIG-EGFSGD-------------Y 362
            .:||....::..|.:           .|..|.|...|.|...:| .||..|             |
  Fly   154 AISNYNDANEVRNCELVGLRDLNQGNSYVQDKVVEFLDHLIDLGVAGFRVDAAKHMWPADLAVIY 218

  Fly   363 NEYFGLNVDTDALNYLGLANHLLHTIDSRIITIA------EDVSGMPTLCRPVSEGGIGFDYRLG 421
            .....||.|.      |.|:.....|...:|.:.      .:.:|:..:........||..:| |
  Fly   219 GRLKNLNTDH------GFASGSKAYIVQEVIDMGGEAISKSEYTGLGAITEFRHSDSIGKVFR-G 276

  Fly   422 MAIPDKWIELLKEQSDDEWDMGNLVHTLTN--RRW----MENTVAYAESHDQALVGDKTIAFWLM 480
                       |:|          :..|||  ..|    .:.::.:.::||.             
  Fly   277 -----------KDQ----------LQYLTNWGTAWGFAASDRSLVFVDNHDN------------- 307

  Fly   481 DKEMYTHMSTLSDSSVIIDRGLALHKMIRLITHALGGEAYLNF-------MGNEF--GHPEWLDF 536
                              .||           |..||...|.:       |.:.|  .||  ...
  Fly   308 ------------------QRG-----------HGAGGADVLTYKVPKQYKMASAFMLAHP--FGT 341

  Fly   537 PRVGNNDSY---------------------------------HYARRQWNLVDDDLLKYKYLNEF 568
            |||.::.|:                                 |..|:.:|:|           .|
  Fly   342 PRVMSSFSFTDTDQGPPTTDGHNIASPIFNSDNSCSGGWVCEHRWRQIYNMV-----------AF 395

  Fly   569 DRAMNEAEERYGWLHSGPAWVSWKHEGDKIIAFERAGLVFVFNFHPQQSF-TGYRVGTNWAGTYQ 632
            ..|:. .:|...|..||...:|:.......:||...      |:....|. ||..     ||||.
  Fly   396 RNAVG-LDEIQNWWDSGSNQISFSRGSRGFVAFNND------NYDLNSSLQTGLP-----AGTYC 448

  Fly   633 AVLSSDDPLFGGHNRIDANCKHPSNPEGYAGRSN 666
            .|:|.        ::..::|...:...|..||::
  Fly   449 DVISG--------SKSGSSCTGKTVTVGSDGRAS 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AGBENP_788342.1 GlgB 52..682 CDD:223373 109/554 (20%)
E_set_GBE_euk_N 62..161 CDD:199884
AmyAc_bac_euk_BE 167..570 CDD:200460 87/455 (19%)
Alpha-amylase_C 588..683 CDD:280898 17/80 (21%)
Amy-dNP_523768.1 AmyAc_bac_euk_AmyA 28..399 CDD:200456 87/457 (19%)
Alpha-amylase 54..342 CDD:278554 76/374 (20%)
Aamy_C 405..493 CDD:214749 20/89 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45443586
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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