DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AGBE and Mal-A3

DIOPT Version :9

Sequence 1:NP_788342.1 Gene:AGBE / 326264 FlyBaseID:FBgn0053138 Length:685 Species:Drosophila melanogaster
Sequence 2:NP_476628.2 Gene:Mal-A3 / 35826 FlyBaseID:FBgn0002571 Length:574 Species:Drosophila melanogaster


Alignment Length:600 Identity:105/600 - (17%)
Similarity:189/600 - (31%) Gaps:205/600 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 VGIASQEPRVGSYDEFADRIVPRIKRQGYNCIQVMAIMEHAYYASFGYQVTSFYAASSRYGNPEQ 253
            :||..|              :|.:|..|.....:..|.. :..|.|||.|.........:|..|.
  Fly    49 IGITQQ--------------LPYLKEIGITATWLSPIFT-SPMADFGYDVADLKGIDPIFGTMED 98

  Fly   254 LKRMIDVAHSHGLFVLLDVVHSHASKN----VQDGLNQFDGTNSCFFHDGA-------------- 300
            .:.::..|....:.::||.|.:|.|..    ::....:.:..:...:|.|.              
  Fly    99 FEALLARAKELDIKIILDFVPNHTSDECDWFIRSAAGEEEYKDFYVWHTGKVVNGIRQPPTNWVS 163

  Fly   301 --RGEHSLWDSRL--------------FNYVEYEVLRFLLSNLRWWHDEYNFDGYRFDGVTSMLY 349
              ||....|:.:.              .||...:|:..:...||:|..:..: |:|.|.|.. :|
  Fly   164 VFRGSMWTWNEQRQAYYLHQFHAKQPDLNYRNPKVVEAMKDVLRFWLRKGAY-GFRIDAVPH-VY 226

  Fly   350 HSRGIGEGFSGD--------------YNEYFGLNVDTDALNYLGLANHLLHTIDSRI-----ITI 395
            ......:|...|              |.::.......:.|..:.....::..||:.:     :.:
  Fly   227 EIPADADGNWPDEPRNEAVSDPEDYTYLQHIYTTDQPETLELVYAFRDVIEEIDAELGGDDRVLL 291

  Fly   396 AEDVSGMPTLCRPVSEGGIGFDYRLGMAIPDKWIELLKE--QSDDEWDMGNLVHTLTNRRWMEN- 457
            .|..|.:..|.:....|     ..||..||..: |||.:  .|.|.:....|:|     .|::| 
  Fly   292 TEAYSPLEVLMQYYGNG-----THLGSQIPFNF-ELLAKISYSSDAYHYSELIH-----NWLDNM 345

  Fly   458 ---TVA--YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDSSVIIDRGLALHKMIRLITHALGG 517
               .||  ...:|||:.:|.:..|                      ||..|.:    :|...|.|
  Fly   346 PEGQVANWVFGNHDQSRIGSRLGA----------------------DRIDACN----MIILGLPG 384

  Fly   518 EAYLNFMGNEFGHPE-WLDF-----PRVGNNDSYHYARR---------QW--------------- 552
            .: :.:.|.|.|..: |:.:     |:...::...:.|.         ||               
  Fly   385 VS-VTYQGEEMGMTDVWISWEDTVDPQACQSNEQEFERLTRDPVRTPFQWSDEVNAGFSNASVTW 448

  Fly   553 ----------NLVDDDLLKYKYLNEFD--RAMNEAEERYGWLHSGPAWVSWKHEGDKIIAFERAG 605
                      |:..:..:...:||.:.  ||:.:...    |..|.  ||....|..::||:|  
  Fly   449 LPVASNYKLVNVKKERGIALSHLNVYKQLRALRDEPT----LKQGD--VSVTAIGPNVLAFKR-- 505

  Fly   606 LVFVFNFHPQQSFTGYRVGTNWAGTYQAVLSSDDPLFGGHNRIDANCKHPSNPEGYAGRSNFIEV 670
                       |..||:       :|..:::.:|.:                     ...|...|
  Fly   506 -----------SLAGYK-------SYITLININDDV---------------------ESINLDSV 531

  Fly   671 YTPSRTAVVYARVSD 685
            :|...|.:.|..|:|
  Fly   532 FTSITTQLQYVVVND 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AGBENP_788342.1 GlgB 52..682 CDD:223373 103/595 (17%)
E_set_GBE_euk_N 62..161 CDD:199884
AmyAc_bac_euk_BE 167..570 CDD:200460 83/483 (17%)
Alpha-amylase_C 588..683 CDD:280898 16/94 (17%)
Mal-A3NP_476628.2 AmyAc_maltase 22..490 CDD:200467 86/499 (17%)
Alpha-amylase 46..400 CDD:278554 75/405 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45443589
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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