DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn28Db and Serpind1

DIOPT Version :10

Sequence 1:NP_001356884.1 Gene:Spn28Db / 326261 FlyBaseID:FBgn0053121 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_077358.1 Gene:Serpind1 / 79224 RGDID:619854 Length:479 Species:Rattus norvegicus


Alignment Length:399 Identity:110/399 - (27%)
Similarity:191/399 - (47%) Gaps:55/399 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 QGNNKIKYLVLLLIATSVLGKFKLNLLELVMDKAES--NFIASPLCIEIGISMILMGAKGTTAEE 64
            ||.::|:.|.:|      ..||..||..::.|:|.|  |...:|:.|...:.||.:|.:|.|.||
  Rat    98 QGKSRIQRLNIL------NAKFAFNLYRVLKDQATSSDNIFIAPVGISTAMGMISLGLRGETHEE 156

  Fly    65 LRSVLDLPVDVTEMAKKYE--------RIMSN--FQKHNG--LRFTNWLYVNETYEVRQDYNTLM 117
            :.|||... |....:.|||        |.:::  |:::.|  |:..|.||:.:.:.:|:|:...|
  Rat   157 VHSVLHFK-DFVNASSKYEVTTIHNLFRKLTHRLFRRNFGYTLQSVNDLYIQKQFPIREDFKAAM 220

  Fly   118 KSTFMAEGK-----DPLSQRKASNSISFSIHRKSHKGMRTISNDHNLQINESA---VLVNTVYYS 174
            :..:.||.:     ||....||::.|     .|..||:    ....|:..:||   :::|.:|:.
  Rat   221 REFYFAEAQEADFSDPAFISKANSHI-----LKLTKGL----IKEALENTDSATQMMILNCIYFK 276

  Fly   175 GAWKTRFSKKDTKLKVFHGDHNKKVYVRMMSHVGRFRIADHSY--GQIIEMPFDNSDLSMIIGLP 237
            |||..:|..:.|....|..:..:.|.|.||...|.|..|:...  ..|:::.:... :||:|.:|
  Rat   277 GAWMNKFPVEMTHNHNFRLNEREVVKVSMMQTKGNFLAANDQELDCDILQLEYVGG-ISMLIVIP 340

  Fly   238 LHNTYLSSIE-----KILRTLSESLVENNVHVELPKFKIKYQTELVESLKKLGIHLIFSNTSDLS 297
            ...:.:.::|     :::....:|:......|.|||||::....|||.||.:||..:|:...::|
  Rat   341 RKLSGMKTLEAQLTPQVVERWQKSMTNRTREVLLPKFKLEKNYNLVEVLKSMGITKLFNKNGNMS 405

  Fly   298 GLLTNGTGAKINHVVHKSFIEINERGASTGEASDHA-ESIQKKTRASTSFKVNRPFVFLIRDKHT 361
            |:  :.....|:...|:|.|.:||.|......:... ..:..:.|    |.|:|||:||:.:..|
  Rat   406 GI--SDQRIIIDLFKHQSTITVNEEGTQAAAVTTVGFMPLSTQVR----FTVDRPFLFLVYEHRT 464

  Fly   362 --VYFRGRV 368
              :.|.|||
  Rat   465 SCLLFMGRV 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28DbNP_001356884.1 serpin 18..370 CDD:476815 105/383 (27%)
Serpind1NP_077358.1 serpinD1_HCF2 33..479 CDD:381004 110/399 (28%)
2 X 11 AA approximate repeats, Asp/Glu-rich (acidic) (hirudin-like) 55..79
Glycosaminoglycan-binding site. /evidence=ECO:0000250 172..192 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.

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