DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spn28Db and Serpinb8

DIOPT Version :9

Sequence 1:NP_001356884.1 Gene:Spn28Db / 326261 FlyBaseID:FBgn0053121 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_001099418.1 Gene:Serpinb8 / 288937 RGDID:1309833 Length:375 Species:Rattus norvegicus


Alignment Length:390 Identity:109/390 - (27%)
Similarity:184/390 - (47%) Gaps:70/390 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 GKFKLNLLELVMDKAES-NFIASPLCIEIGISMILMGAKGTTAEELRSVLDLPVDVTEMAKKYER 84
            |.|.::||:::.::.:| |....|:.:...::|:.:||||.||.::..||.|..| .::.:.::.
  Rat     9 GSFAISLLKILGEEDKSRNLFFCPMSVSSALAMVYLGAKGNTATQMSQVLGLSGD-GDVHQGFQT 72

  Fly    85 IMSNFQKHNGLRFTNWLYVNETYEVRQDYNTLMKST---FMAEGKDPLSQRKAS---------NS 137
            :::...| :|.::                  |:||.   |..|..|.||..|.|         ..
  Rat    73 LLAEVNK-SGTQY------------------LLKSACRLFGEESCDFLSTFKESCQKFYQAGIEE 118

  Fly   138 ISFSIHRKSHKGMRTISNDHNLQINE----------------SAVLVNTVYYSGAWKTRFSKKDT 186
            :||.   |..:|.|...||..|:..|                ..||||.:|:.|.||.:|.:|.|
  Rat   119 MSFV---KDTEGCRKRINDWVLEKTEGKISEVLSPGTVCPLTKLVLVNAMYFKGKWKAQFDRKYT 180

  Fly   187 KLKVFHGDHNKKVYVRMMSHVGRFRIA--DHSYGQIIEMPFDNSDLSMIIGLPLHNTYLSSIEKI 249
            :...|..:..:|..|:||....:|::|  |....|::.:|:...:|||::.||..::.|:.:||.
  Rat   181 RGMPFKTNQEEKKTVQMMFKHAKFKMAHVDEVNAQVLALPYAEDELSMVVLLPDESSDLTVVEKA 245

  Fly   250 LR-------TLSESLVENNVHVELPKFKIKYQTELVESLKKLGIHLIFSNT-SDLSGLLTNGTGA 306
            |.       |..|:|.|:.|.|..|:.|::...:|...|:.||:...|..| :|.|| :|:....
  Rat   246 LTYEKLRAWTNPETLTESKVQVFFPRLKLEESYDLETVLQSLGMTDAFEETKADFSG-MTSKKNV 309

  Fly   307 KINHVVHKSFIEINERGASTGEASDHAESIQ--KKTRASTSFKVNRPFVFLIRDKHT--VYFRGR 367
            .::.|.||.|:|:||.|.   ||:.....|:  :..|....|..:|||:|.|..:.|  :.|.||
  Rat   310 PVSKVAHKCFVEVNEEGT---EAAATTAVIRNTRSCRIEPRFCADRPFLFFIWHQKTSSILFCGR 371

  Fly   368  367
              Rat   372  371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28DbNP_001356884.1 SERPIN 22..368 CDD:238101 108/389 (28%)
Serpinb8NP_001099418.1 SERPIN 4..375 CDD:294093 109/390 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57242
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 1 1.000 - - FOG0000050
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.930

Return to query results.
Submit another query.