DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spn28Db and Serpina3k

DIOPT Version :9

Sequence 1:NP_001356884.1 Gene:Spn28Db / 326261 FlyBaseID:FBgn0053121 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_035588.2 Gene:Serpina3k / 20714 MGIID:98377 Length:418 Species:Mus musculus


Alignment Length:385 Identity:99/385 - (25%)
Similarity:177/385 - (45%) Gaps:46/385 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LIATSVLGKFKLNLL-ELVMDKAESNFIASPLCIEIGISMILMGAKGTTAEELRSVLDLPVDVTE 77
            |...||...|..:|. :|.:...:.|.:.|||.|...::::.:||||.|.||:...|...:..|.
Mouse    46 LTLASVNTDFAFSLYKKLALKNQDKNIVFSPLSISAALALVSLGAKGKTMEEILEGLKFNLTETP 110

  Fly    78 MAKKYE------RIMSNFQKHNGLRFTNWLYVNETYEVRQDYNTLMKSTFMAEG--KDPLSQRKA 134
            .|..::      :.:|..:..:.:...|.:::.:..::..:::...::.:..|.  .|.....:|
Mouse   111 EADIHQGFGNLLQSLSQPEDQDQINIGNAMFIEKDLQILAEFHEKTRALYQTEAFTADFQQPTEA 175

  Fly   135 SNSISFSIHRKSHKGM--RTIS--NDHNLQINESAVLVNTVYYSGAWKTRFSKKDTKLKVFHGDH 195
            .|.|:..:..:: :||  :.||  :|..|.     ||||.:|:.|.||..|..:||....|:.|.
Mouse   176 KNLINDYVSNQT-QGMIKKLISELDDGTLM-----VLVNYIYFKGKWKISFDPQDTFESEFYLDE 234

  Fly   196 NKKVYVRMMS----HVGRFRIADHSYGQIIEMPFDNSDLSMIIGLP----LHNTYLS----SIEK 248
            .:.|.|.||.    ....||..:.|. .::|:.:..:..:::| ||    :.....|    ::.|
Mouse   235 KRSVKVPMMKMKLLTARHFRDEELSC-SVLELKYTGNASALLI-LPDQGRMQQVEASLQPETLRK 297

  Fly   249 ILRTLSESLVENNVHVELPKFKIKYQTELVES-LKKLGIHLIFSNTSDLSGLLTNGTGAKINHVV 312
            ..:||..|.:|   .:.||||.|.....|.|. |.::||..:|:..:|||| :|......::.||
Mouse   298 WRKTLFSSQIE---ELNLPKFSIASDYRLEEDVLPEMGIKEVFTEQADLSG-ITEAKKLSVSQVV 358

  Fly   313 HKSFIEINERGASTGEASDHAESIQKKTRASTSFKVNRPFVFLIRDKHT----VYFRGRV 368
            ||:.:::.|.|.....|:.....|:|....:..|  ||||:.:|  .||    :.|..:|
Mouse   359 HKAVLDVAETGTEAAAATGVIGGIRKAVLPAVCF--NRPFLIVI--YHTSAQSILFMAKV 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28DbNP_001356884.1 SERPIN 22..368 CDD:238101 95/375 (25%)
Serpina3kNP_035588.2 SERPIN 57..417 CDD:214513 95/374 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.