DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn28Db and srp-8

DIOPT Version :9

Sequence 1:NP_001356884.1 Gene:Spn28Db / 326261 FlyBaseID:FBgn0053121 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_001309497.1 Gene:srp-8 / 191960 WormBaseID:WBGene00005649 Length:372 Species:Caenorhabditis elegans


Alignment Length:370 Identity:81/370 - (21%)
Similarity:166/370 - (44%) Gaps:43/370 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 KFKLNLLELVMDKAESNFIASPLCIEIGISMILMGAKGTTAEELRSVLDLPVDVTEMAKKYERI- 85
            :|.|.||. ..|.::| |:.||:.|.:.:..:...|:|.|..::...|.......||...:..: 
 Worm    17 EFALKLLH-QQDHSQS-FVFSPIAISLALYSLYEAARGETRSQIHDCLFKNATDGEMVTHFSNVS 79

  Fly    86 --MSNFQK------------HNGLRFTNWLYVNETYEVRQDYNTLMKSTFMAEGKDPLSQRKASN 136
              :|..:|            .||:: |..|.::   :|:..||..:.|      .|..::::...
 Worm    80 TALSAMKKDPQVKICNHIICRNGIK-TESLCLD---KVKLLYNCEVSS------HDLDNEKETIK 134

  Fly   137 SISFSIHRKSHKGMRTISNDHNLQINESAVLVNTVYYSGAWKTRFSKKDTKLKVFHGDHNKKVYV 201
            :|:..|...:...::.|:...::..::..|.::...:...|:.:|.|..|..|.|....|....:
 Worm   135 TINKLIRENTDGHIKKINTKISIDKDQVVVFLSAACFEAQWQNKFHKLSTSKKEFFCTANSHRNI 199

  Fly   202 RMMSHVGRFR-IADHSYGQIIEMPFDNSDLSMIIGLPLHNTYLSSIEKILRTLSESLVENN---- 261
            :.:...|..| ..::...|::.:|:.:|...|.|.||.....|:...|.|.|.:...:::|    
 Worm   200 KFLHATGANRKYCENDKFQVLSLPYTDSSFEMTIFLPKEQFGLAEALKTLGTSTIQELKSNVSNY 264

  Fly   262 -VHVELPKFKIKYQTELVESLKKLGIHLIFSNTSDLSGLLTNGTGAKINHVVHKSFIEINERGAS 325
             |:|::|.::.:.:.:|..:|:.:||..|.:.::.:.....|   ..|:..:||:.||:||.|.|
 Worm   265 LVNVQIPIWRNETEIDLNSTLQAIGITKILNESAYIGNFAEN---VHISEFIHKAIIEVNENGTS 326

  Fly   326 TGEASDHAESIQKKTRAST----SFKVNRPFVFLIRDKHTVYFRG 366
               .:.:.:.|.|:.|..|    .|..:.||::.|..|:::.|.|
 Worm   327 ---PATNTKVITKRWREETGEIRDFIADHPFLYTIHYKNSILFMG 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28DbNP_001356884.1 SERPIN 22..368 CDD:238101 81/370 (22%)
srp-8NP_001309497.1 serpinL_nematode 14..370 CDD:381047 81/370 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H76659
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57242
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 1 1.000 - - FOG0000050
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100128
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.930

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