DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spn28Db and Serpini1

DIOPT Version :9

Sequence 1:NP_001356884.1 Gene:Spn28Db / 326261 FlyBaseID:FBgn0053121 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_446231.1 Gene:Serpini1 / 116459 RGDID:619896 Length:410 Species:Rattus norvegicus


Alignment Length:355 Identity:89/355 - (25%)
Similarity:180/355 - (50%) Gaps:23/355 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 ESNFIASPLCIEIGISMILMGAKGTTAEELRSVLDLPV----DVTEMAKKYERIMSNFQKHNGLR 96
            :.|.:.|||.|.:.:.::.:||:|:|.:|:|..:....    :.....:.:..::|..:....::
  Rat    43 DENILFSPLSIALAMGVMELGAQGSTLKEIRHSMGYESLKSGEEFSFLRDFSSMVSAEEGQYVMK 107

  Fly    97 FTNWLYVNETYEVRQDYNTLMKSTFMAE-GKDPLSQRKA-SNSISFSIHRKSHKGMRTISNDHNL 159
            ..|.|:|...:.:.:::..:||..|.|| .....|:..| :|.|:..:...::..::.:.:..:.
  Rat   108 IANSLFVQNGFHINEEFLQMMKMYFNAEVNHVDFSENVAVANYINKWVENYTNSLLKDLVSPGDF 172

  Fly   160 QINESAVLVNTVYYSGAWKTRFSKKDTKLKVFHGDHNKKVYVRMMSHVGRFRIADHSYG------ 218
            .......|:|.||:.|.||::|..::|:...|..|...:|.:.||...|.|...:.|.|      
  Rat   173 DAVTHLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQQGEFYYGEFSDGSNEAGG 237

  Fly   219 --QIIEMPFDNSDLSMIIGLPLHNTYLSSIEKILR-----TLSESLVENNVHVELPKFKIKYQTE 276
              |::|:|::..::||::.|......|:::|.:|:     ..:.|:.:..|.|.||:|.::.:.:
  Rat   238 IYQVLEIPYEGDEISMMLVLSRQEVPLATLEPLLKPQLIEEWANSVKKQKVEVYLPRFTVEQEID 302

  Fly   277 LVESLKKLGIHLIFSNTSDLSGLLTNGTGAKINHVVHKSFIEINERGASTGEASDHAESIQKKTR 341
            |.:.||.||:..||...::|:. :::.....::..|||||||:||.|:....||... :|.:...
  Rat   303 LKDILKALGVTEIFIKDANLTA-MSDKKELFLSKAVHKSFIEVNEEGSEAAVASGMI-AISRMAV 365

  Fly   342 ASTSFKVNRPFVFLIRDKH--TVYFRGRVV 369
            ......|:.||:|||:::.  |:.|.|||:
  Rat   366 LFPQVIVDHPFLFLIKNRKTGTILFMGRVM 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28DbNP_001356884.1 SERPIN 22..368 CDD:238101 87/352 (25%)
Serpini1NP_446231.1 neuroserpin 23..410 CDD:239003 89/355 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57242
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 1 1.000 - - FOG0000050
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100128
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.930

Return to query results.
Submit another query.