DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubi-p5E and RAD23

DIOPT Version :10

Sequence 1:NP_727078.1 Gene:Ubi-p5E / 326237 FlyBaseID:FBgn0086558 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_010877.3 Gene:RAD23 / 856674 SGDID:S000000763 Length:398 Species:Saccharomyces cerevisiae


Alignment Length:230 Identity:50/230 - (21%)
Similarity:83/230 - (36%) Gaps:46/230 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
            |....:.:.|::|||:||...|.|:.........|.:||::||.|:|.:|:|:..::.       
Yeast     7 KNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKD------- 64

  Fly    71 LRLRGGMQIFVKTLTGKTITLEVEPSDTIEN--VKAKIQDKEGIPPDQQRLIFA-----GKQLED 128
                |...:|:.:....|.|...||....|:  ...:....|..|........|     |.|.::
Yeast    65 ----GDQVVFMVSQKKSTKTKVTEPPIAPESATTPGRENSTEASPSTDASAAPAATAPEGSQPQE 125

  Fly   129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL---------EVE---------PSDTI 175
            .:|.:....:..||...|          |.|...:||..         |||         |...:
Yeast   126 EQTATTERTESASTPGFV----------VGTERNETIERIMEMGYQREEVERALRAAFNNPDRAV 180

  Fly   176 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 210
            |.:...|.:....|..||:...|.:|.....|.::
Yeast   181 EYLLMGIPENLRQPEPQQQTAAAAEQPSTAATTAE 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubi-p5ENP_727078.1 Ubl_ubiquitin 1..76 CDD:340501 18/69 (26%)
Ubl_ubiquitin 77..152 CDD:340501 15/81 (19%)
Ubl_ubiquitin 153..228 CDD:340501 16/76 (21%)
Ubl_ubiquitin 229..304 CDD:340501
Ubl_ubiquitin 305..380 CDD:340501
Ubl_ubiquitin 381..456 CDD:340501
Ubl_ubiquitin 457..532 CDD:340501
RAD23NP_010877.3 rad23 2..398 CDD:273167 50/230 (22%)
Blue background indicates that the domain is not in the aligned region.

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