DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubi-p5E and Rad23

DIOPT Version :10

Sequence 1:NP_727078.1 Gene:Ubi-p5E / 326237 FlyBaseID:FBgn0086558 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_651918.2 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster


Alignment Length:455 Identity:94/455 - (20%)
Similarity:160/455 - (35%) Gaps:121/455 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQK 63
            |.|.:|.|..:|.|:|..|..|:..:|.||.::.|  ...::|:||:||..|.|.||:..||:.:
  Fly     1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGSYNVDE 65

  Fly    64 ESTLHLVLRLRGGM----QIFVKTLTGKTITLEVE-------------PSDTIENVKAKIQDKEG 111
            :..:.::|......    |:.||.....|.|.:.:             ||.|  |.:..:..:|.
  Fly    66 KKFIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSST--NTEDSVLSRET 128

  Fly   112 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE---PSD 173
            .|.....||  |:       |:..::|..:..:|::    |.:.      .:|:...||   |.:
  Fly   129 RPLSSDELI--GE-------LAQASLQSRAESNLLM----GDEY------NQTVLSMVEMGYPRE 174

  Fly   174 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 238
            .:|...|...:.   |......:..|...|:|   :.||...|||...:  :..|.|....|...
  Fly   175 QVERAMAASYNN---PERAVEYLINGIPAEEG---TFYNRLNESTNPSL--IPSGPQPASATSAE 231

  Fly   239 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 303
            ::.....:|.:.:.:....:|        .:.||:                |....||.||:..|
  Fly   232 RSTESNSDPFEFLRSQPQFLQ--------MRSLIY----------------QNPHLLHAVLQQIG 272

  Fly   304 ------------GMQIFVKTLTGKTITLEVE-------------PSDTIENVKAKIQDKEGIPPD 343
                        ....|:..| .:.|..|.|             || |::||.....|.|.....
  Fly   273 QTNPALLQLISENQDAFLNML-NQPIDRESESGATVPPVSNARIPS-TLDNVDLFSPDLEVATSA 335

  Fly   344 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408
            |:.........:.|....:.:::                   :.|...||.|..:..|.||.:||
  Fly   336 QRSAAGTSAAHQSGSAADNEDLE-------------------QPLGVSTIRLNRQDKDAIERLKA 381

  Fly   409  408
              Fly   382  381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubi-p5ENP_727078.1 Ubl_ubiquitin 1..76 CDD:340501 25/76 (33%)
Ubl_ubiquitin 77..152 CDD:340501 17/91 (19%)
Ubl_ubiquitin 153..228 CDD:340501 15/77 (19%)
Ubl_ubiquitin 229..304 CDD:340501 12/86 (14%)
Ubl_ubiquitin 305..380 CDD:340501 14/87 (16%)
Ubl_ubiquitin 381..456 CDD:340501 9/28 (32%)
Ubl_ubiquitin 457..532 CDD:340501
Rad23NP_651918.2 rad23 1..413 CDD:273167 94/455 (21%)
Blue background indicates that the domain is not in the aligned region.

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