DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubi-p5E and CG3223

DIOPT Version :9

Sequence 1:NP_001284937.1 Gene:Ubi-p5E / 326237 FlyBaseID:FBgn0086558 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_649758.1 Gene:CG3223 / 40947 FlyBaseID:FBgn0037538 Length:415 Species:Drosophila melanogaster


Alignment Length:447 Identity:73/447 - (16%)
Similarity:143/447 - (31%) Gaps:139/447 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
            ::|.:..|.:.|:.:.|:.                   .:|..|:.|||..|| :..:|..:.:|
  Fly    29 YLKAVVTKEMHLQFDASEL-------------------EIIHHGRVLEDADTL-NRTLQPNAVIH 73

  Fly    69 LVLRLR--------GGMQI---FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122
            ...:::        ...:|   .::.|...|..|::..:... |:..||..:.   |:.:|.:.|
  Fly    74 CFQKIKRYSPYVPPAAAEINTKHIQELFSLTSHLQISVTSRF-NILQKILAEY---PEFRRNLGA 134

  Fly   123 GKQLEDG-------------RTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDT 174
            ...:.|.             ..:.||.:..|:...:|                .||..|:..:.:
  Fly   135 QALIRDSVLFNMLHEPEVVQNLVKDYPLICEAAPFIV----------------DTIRKELARNSS 183

  Fly   175 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-------------NIQKESTLHLVLRLR 226
            ...::.:...:.....:::..:.||.....|.:.:..             ||::.|...|...| 
  Fly   184 ATQLQEQAASESTTSSEEENSLGAGSSSSGGSSSTAVAAAAAANRRDEMANIRQISRQQLANAL- 247

  Fly   227 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ------RLIFAGKQLEDGRTLS 285
                            ..|.|.:::.|:..:..| |.:..|::      .|...|.....|...|
  Fly   248 ----------------ANVTPFNSLSNIAQRNAD-EAVQGDERPRTTSAPLAGVGGAAGTGAGSS 295

  Fly   286 DYNIQKESTLHLVLR--LRGGMQIFVKTLTGKTITLEVE-------------PSDTIENVKAKIQ 335
            ...|...|....:||  |....|...:........:|||             |:|.:::......
  Fly   296 SGAISSGSISSELLRNELARAFQSLSQDQPAPVENMEVESGEGPVPEQAATAPADDVDDEDDGGD 360

  Fly   336 DKEGIPPDQQRLIFAGKQLEDGRT-----------------LSDYNIQKESTLHLVL 375
            |.:.:|...:|..|.    |..||                 |||.|:  |..::|::
  Fly   361 DSDVLPRRYRRHRFT----EQLRTMAAMGFINHTQNVSYLELSDGNV--EHAINLLM 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubi-p5ENP_001284937.1 Ubiquitin 1..76 CDD:176398 13/79 (16%)
UBQ 1..72 CDD:214563 13/67 (19%)
Ubiquitin 77..152 CDD:176398 15/90 (17%)
UBQ 77..148 CDD:214563 15/86 (17%)
Ubiquitin 153..228 CDD:176398 11/87 (13%)
UBQ 153..224 CDD:214563 10/83 (12%)
Ubiquitin 229..304 CDD:176398 15/82 (18%)
UBQ 229..300 CDD:214563 12/76 (16%)
Ubiquitin 305..380 CDD:176398 19/101 (19%)
UBQ 305..376 CDD:214563 19/101 (19%)
Ubiquitin 381..456 CDD:176398
UBQ 381..452 CDD:214563
Ubiquitin 457..532 CDD:176398
UBQ 457..528 CDD:214563
CG3223NP_649758.1 UBA_like_SF 373..410 CDD:304366 9/42 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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