DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubi-p5E and nedd8

DIOPT Version :10

Sequence 1:NP_727078.1 Gene:Ubi-p5E / 326237 FlyBaseID:FBgn0086558 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_958478.2 Gene:nedd8 / 368667 ZFINID:ZDB-GENE-030616-588 Length:89 Species:Danio rerio


Alignment Length:78 Identity:46/78 - (58%)
Similarity:61/78 - (78%) Gaps:0/78 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 521
            |.|.|||||||.|.:::||:|.:|.:|.::::||||||.|||||::|||:.|.:|.:||.||..|
Zfish     1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIQGGS 65

  Fly   522 TLHLVLRLRGGAI 534
            .|||||.||||.|
Zfish    66 VLHLVLALRGGQI 78

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubi-p5ENP_727078.1 Ubl_ubiquitin 1..76 CDD:340501
Ubl_ubiquitin 77..152 CDD:340501
Ubl_ubiquitin 153..228 CDD:340501
Ubl_ubiquitin 229..304 CDD:340501
Ubl_ubiquitin 305..380 CDD:340501
Ubl_ubiquitin 381..456 CDD:340501
Ubl_ubiquitin 457..532 CDD:340501 43/74 (58%)
nedd8NP_958478.2 Ubl_NEDD8 3..76 CDD:340504 42/72 (58%)
Blue background indicates that the domain is not in the aligned region.

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