DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubi-p5E and Ubd

DIOPT Version :9

Sequence 1:NP_001284937.1 Gene:Ubi-p5E / 326237 FlyBaseID:FBgn0086558 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_075626.1 Gene:Ubd / 24108 MGIID:1344410 Length:162 Species:Mus musculus


Alignment Length:148 Identity:44/148 - (29%)
Similarity:74/148 - (50%) Gaps:6/148 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL-- 73
            :.:|.|...:|.::.:...|:.:..:....|.|:...|.|:..|.||.|.|.||:|:||.|::  
Mouse    15 RLMTFETTENDKVKKINEHIRSQTKVSVQDQILLLDSKILKPHRKLSSYGIDKETTIHLTLKVVK 79

  Fly    74 --RGGMQIFV--KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 134
              ...:.:|:  ....|:...|.|..|.::..||..|:....:.|.:|.:...||:||||:.::|
Mouse    80 PSDEELPLFLVESKNEGQRHLLRVRRSSSVAQVKEMIESVTSVIPKKQVVNCNGKKLEDGKIMAD 144

  Fly   135 YNIQKESTLHLVLRLRGG 152
            |||:..|.|.|.....||
Mouse   145 YNIKSGSLLFLTTHCTGG 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubi-p5ENP_001284937.1 Ubiquitin 1..76 CDD:176398 19/68 (28%)
UBQ 1..72 CDD:214563 18/60 (30%)
Ubiquitin 77..152 CDD:176398 23/76 (30%)
UBQ 77..148 CDD:214563 23/72 (32%)
Ubiquitin 153..228 CDD:176398 44/148 (30%)
UBQ 153..224 CDD:214563 44/148 (30%)
Ubiquitin 229..304 CDD:176398
UBQ 229..300 CDD:214563
Ubiquitin 305..380 CDD:176398
UBQ 305..376 CDD:214563
Ubiquitin 381..456 CDD:176398
UBQ 381..452 CDD:214563
Ubiquitin 457..532 CDD:176398
UBQ 457..528 CDD:214563
UbdNP_075626.1 UBQ 9..76 CDD:214563 18/60 (30%)
UBQ 15..76 CDD:294102 18/60 (30%)
UBQ 96..155 CDD:214563 21/58 (36%)
UBQ 96..155 CDD:294102 21/58 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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